diff --git a/DEVELOPMENT.md b/DEVELOPMENT.md index 18060ef..0f387ca 100644 --- a/DEVELOPMENT.md +++ b/DEVELOPMENT.md @@ -2,7 +2,7 @@ **Internal documentation for Atlas Analytics Lab website developers** -**Last Updated:** December 2, 2025 +**Last Updated:** February 6, 2026 **Repository:** https://github.com/AtlasAnalyticsLab/AtlasAnalyticsLab.github.io **Status:** Actively maintained @@ -714,8 +714,9 @@ headline: "Text with [link](OPENINGS_LINK)" ### Notes - All page content now uses `{{ site.url }}{{ site.baseurl }}/path` or `{{ site.baseurl }}/path` patterns -- No hardcoded URLs exist in templates, includes, or page content (as of November 27, 2025) -- Hardcoded URLs only in configuration files (`_config.yml`, `robots.txt`) and documentation +- No hardcoded *internal* URLs exist in templates, includes, or page content (as of November 27, 2025) +- External links (e.g., project websites) may use full `https://...` URLs as needed +- Hardcoded URLs should otherwise be limited to configuration files (`_config.yml`, `robots.txt`) and documentation - Repository URL structure follows GitHub Pages naming conventions --- diff --git a/README.md b/README.md index 6e53c6f..5909ab8 100644 --- a/README.md +++ b/README.md @@ -211,6 +211,12 @@ This setting affects the entire site including header, footer, and content areas --- +## Project Sites + +- **AtlasPatch:** https://atlasanalyticslab.github.io/AtlasPatch/ (linked from the header -> Projects dropdown) + +--- + ## Deployment The site automatically deploys via **GitHub Actions** when you push to the `main` branch. @@ -388,4 +394,4 @@ Concordia University, Montreal, QC, Canada --- -**Last Updated:** December 2, 2025 +**Last Updated:** February 6, 2026 diff --git a/_data/alumni_members.yml b/_data/alumni_members.yml index 011ccbc..c2c3979 100644 --- a/_data/alumni_members.yml +++ b/_data/alumni_members.yml @@ -59,6 +59,6 @@ linkedin: "https://ca.linkedin.com/in/cassandre-notton-69ba6a131" - name: Denisha Thakkar - info_current: MSc Graduate, ML Egnineer @ CIBC + info_current: MSc Graduate, ML Engineer @ CIBC linkedin: "https://ca.linkedin.com/in/denisha-thakkar" diff --git a/_data/news.yml b/_data/news.yml index 23464c7..dcdc24b 100644 --- a/_data/news.yml +++ b/_data/news.yml @@ -115,6 +115,9 @@ # headline: '🎂 Happy Birthday to Omar Abdelwahed!' #============================================================================== +- date: February 5, 2026 + headline: "We've released **AtlasPatch**! Visit the project page [here](https://atlasanalyticslab.github.io/AtlasPatch/)." + - date: November 27, 2025 headline: "**We are hiring PhD students!** Join our lab for cutting-edge research in computational pathology. [See details](OPENINGS_LINK)" diff --git a/_data/publications.yml b/_data/publications.yml index c40c3bd..a3bf6aa 100644 --- a/_data/publications.yml +++ b/_data/publications.yml @@ -38,6 +38,19 @@ # list_image: "images/pubpic/survey.jpg" #============================================================================== +- id: "Alagha_arXiv2025_AtlasPatch" + title: "AtlasPatch: An Efficient and Scalable Tool for Whole Slide Image Preprocessing in Computational Pathology" + authors: "Ahmed Alagha, Christopher Leclerc, Yousef Kotp, Omar Abdelwahed, Calvin Moras, Peter Rentopoulos, Rose Rostami, Bich Ngoc Nguyen, Jumanah Baig, Abdelhakim Khellaf, Vincent Quoc-Huy Trinh, Rabeb Mizouni, Hadi Otrok, Jamal Bentahar, Mahdi S. Hosseini" + year: 2026 + status: "under_review" + type: "article" + journal: "arxiv:2602.03998" + url: "https://atlasanalyticslab.github.io/AtlasPatch/" + arxiv: "2602.03998" + github: "https://github.com/AtlasAnalyticsLab/AtlasPatch" + list_image: "images/pubpic/atlaspatch.png" + highlight: 0 + - id: "He_IPMI2025_PathTTT" title: "PathTTT: Test-Time Training with Meta-auxiliary Learning for Pathology Image Classification" authors: "Haoyu He, Mahdi S. Hosseini, Yang Wang" diff --git a/_includes/footer.html b/_includes/footer.html index 2313b67..4b027fe 100644 --- a/_includes/footer.html +++ b/_includes/footer.html @@ -17,7 +17,7 @@ Dependencies: - Bootstrap 5 grid system and icons - - theme-toggle.js script + - JavaScript loaded by _layouts/default.html --> - - - diff --git a/_includes/header.html b/_includes/header.html index 8e5c5e4..b0d7b11 100644 --- a/_includes/header.html +++ b/_includes/header.html @@ -11,7 +11,7 @@ - Persistent theme preference via localStorage Navigation Pages: - - Home, News, Team, Openings, Publications, Funding, Lab Life, Contact + - Home, News, Team, Openings, Publications, Projects, Funding, Lab Life, Contact Dependencies: - Bootstrap 5 navbar component @@ -38,6 +38,20 @@
  • Team
  • Openings
  • Publications
    • +
  • + + +
  • Funding
  • Lab Life
  • Contact
    • diff --git a/css/main.scss b/css/main.scss index 533c005..f0baa5b 100644 --- a/css/main.scss +++ b/css/main.scss @@ -102,7 +102,6 @@ p.byline { border-bottom: 1px solid var(--atlas-border-color); min-height: var(--atlas-nav-height); transition: background-color 0.3s ease, border-color 0.3s ease; - overflow-x: hidden; } .navbar .container-fluid { @@ -126,6 +125,10 @@ p.byline { color: var(--atlas-link-color); } +.navbar .dropdown-toggle-no-caret::after { + display: none; +} + .navbar .navbar-toggler { border-color: var(--atlas-border-color); color: var(--atlas-body-text); diff --git a/googlecf337ccf1dc755f1.html b/googlecf337ccf1dc755f1.html new file mode 100644 index 0000000..9938ace --- /dev/null +++ b/googlecf337ccf1dc755f1.html @@ -0,0 +1 @@ +google-site-verification: googlecf337ccf1dc755f1.html \ No newline at end of file diff --git a/images/pubpic/atlaspatch.png b/images/pubpic/atlaspatch.png new file mode 100644 index 0000000..f0010e7 Binary files /dev/null and b/images/pubpic/atlaspatch.png differ