model-selection/version.xml at master · BEAST2-Dev/model-selection · GitHub

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<package name='MODEL_SELECTION' version='1.7.1'>
	<depends on='BEAST.base' atleast='2.8.0'/>
	<depends on='BEAST.app' atleast='2.8.0'/>
    <packageapp description="Path sampler"
              class="modelselection.app.tools.PathSampler"
              args=""
              icon="modelselection/app/tools/ps.png"
            />
    <packageapp description="Path Sample Analyser"
              class="modelselection.app.tools.PathSampleAnalyser"
              args=""
              icon="modelselection/app/tools/ps.png"
            />
    <packageapp description="Conditional Predictive Ordinates (CPO) Analyser"
              class="modelselection.cpo.CPOAnalyser"
              args=""
              icon="modelselection/app/tools/ps.png"
            />
    <packageapp description="Akaike Information Criterion by MCMC"
              class="modelselection.inference.AICMAnalyser"
              args=""
              icon="modelselection/app/tools/ps.png"
            />
<!--
    <packageapp description="Paired path sampler"
              class="beast.app.tools.PairedPathSampler"
              args=""
              icon="beast/app/tools/ps.png"
            />
    <packageapp description="Paired Path Sample Analyser"
              class="beast.app.tools.PairedPathSampler"
              args=""
              icon="beast/app/tools/ps.png"
            />
-->

    <service type="beast.base.core.BEASTInterface">
        <provider classname="modelselection.core.CPOLogger"/>
        <provider classname="modelselection.cpo.BEASTRunAnalyser"/>
        <provider classname="modelselection.cpo.CPOAnalyser"/>
        <provider classname="modelselection.gss.coalescent.ExponentialProductPosteriorMeansLikelihood"/>
        <provider classname="modelselection.gss.distribution.GSSTreeDistribution"/>
        <provider classname="modelselection.gss.distribution.LogitTransformedNormalKDEDistribution"/>
        <provider classname="modelselection.gss.distribution.LogTransformedNormalKDEDistribution"/>
        <provider classname="modelselection.gss.distribution.MultivariateKDEDistribution"/>
        <provider classname="modelselection.gss.distribution.NormalKDEDistribution"/>
        <provider classname="modelselection.gss.GeneralisedSteppingStone"/>
        <provider classname="modelselection.gss.GeneralisedSteppingStoneStep"/>
        <provider classname="modelselection.gss.GSSFromFile"/>
        <provider classname="modelselection.gss.MCMC2GSS"/>
        <provider classname="modelselection.gss.MCMC2IS"/>
        <provider classname="modelselection.gss.TraceLog"/>
        <provider classname="modelselection.gss.TreeFromTreeSetFileInitialiser"/>
        <provider classname="modelselection.inference.AICMAnalyser"/>
        <provider classname="modelselection.inference.DiffLogger"/>
        <provider classname="modelselection.inference.PairedPathSampleAnalyser"/>
        <provider classname="modelselection.inference.PairedPathSampler"/>
        <provider classname="modelselection.inference.PairedPathSamplingStep"/>
        <provider classname="modelselection.inference.PathSampleAnalyser"/>
        <provider classname="modelselection.inference.PathSampler"/>
        <provider classname="modelselection.inference.PathSamplerFromFile"/>
        <provider classname="modelselection.inference.PathSamplingStep"/>
    </service>


	<map from="beast.core.CPOLogger"  to="modelselection.core.CPOLogger"/>

	<map from="beast.app.tools.GeneralisedSteppingStone" to="modelselection.app.tools.GeneralisedSteppingStone"/>
	<map from="beast.app.tools.PairedPathSampleAnalyser" to="modelselection.app.tools.PairedPathSampleAnalyser"/>
	<map from="beast.app.tools.PairedPathSampler" to="modelselection.app.tools.PairedPathSampler"/>
	<map from="beast.app.tools.PathSampleAnalyser" to="modelselection.app.tools.PathSampleAnalyser"/>
	<map from="beast.app.tools.PathSampler" to="modelselection.app.tools.PathSampler"/>

	<map from="beast.cpo.BEASTRunAnalyser" to="modelselection.cpo.BEASTRunAnalyser"/>
	<map from="beast.cpo.CPOAnalyser" to="modelselection.cpo.CPOAnalyser"/>

	<map from="beast.inference.AICMAnalyser" to="modelselection.inference.AICMAnalyser"/>
	<map from="beast.inference.DiffLogger" to="modelselection.inference.DiffLogger"/>
	<map from="beast.inference.PairedPathSampleAnalyser" to="modelselection.inference.PairedPathSampleAnalyser"/>
	<map from="beast.inference.PairedPathSampler" to="modelselection.inference.PairedPathSampler"/>
	<map from="beast.inference.PairedPathSamplingStep" to="modelselection.inference.PairedPathSamplingStep"/>
	<map from="beast.inference.PathSampleAnalyser" to="modelselection.inference.PathSampleAnalyser"/>
	<map from="beast.inference.PathSamplerFromFile" to="modelselection.inference.PathSamplerFromFile"/>
	<map from="beast.inference.PathSampler" to="modelselection.inference.PathSampler"/>
	<map from="beast.inference.PathSamplingStep" to="modelselection.inference.PathSamplingStep"/>

	<map from="beast.gss.GeneralisedSteppingStone" to="modelselection.gss.GeneralisedSteppingStone"/>
	<map from="beast.gss.GeneralisedSteppingStoneStep" to="modelselection.gss.GeneralisedSteppingStoneStep"/>
	<map from="beast.gss.GSSFromFile" to="modelselection.gss.GSSFromFile"/>
	<map from="beast.gss.MCMC2GSS" to="modelselection.gss.MCMC2GSS"/>
	<map from="beast.gss.MCMC2IS" to="modelselection.gss.MCMC2IS"/>
	<map from="beast.gss.TraceLog" to="modelselection.gss.TraceLog"/>
	<map from="beast.gss.TreeFromTreeSetFileInitialiser" to="modelselection.gss.TreeFromTreeSetFileInitialiser"/>

	<map from="beast.gss.coalescent.CoalescentTreeIntervalStatistic" to="modelselection.gss.coalescent.CoalescentTreeIntervalStatistic"/>
	<map from="beast.gss.coalescent.ExponentialProductPosteriorMeansLikelihood" to="modelselection.gss.coalescent.ExponentialProductPosteriorMeansLikelihood"/>

	<map from="beast.gss.distribution.ComplexArray" to="modelselection.gss.distribution.ComplexArray"/>
	<map from="beast.gss.distribution.FastFourierTransform" to="modelselection.gss.distribution.FastFourierTransform"/>
	<map from="beast.gss.distribution.GSSTreeDistribution" to="modelselection.gss.distribution.GSSTreeDistribution"/>
	<map from="beast.gss.distribution.KernelDensityEstimatorDistribution" to="modelselection.gss.distribution.KernelDensityEstimatorDistribution"/>
	<map from="beast.gss.distribution.LogitTransformedNormalKDEDistribution" to="modelselection.gss.distribution.LogitTransformedNormalKDEDistribution"/>
	<map from="beast.gss.distribution.LogTransformedNormalKDEDistribution" to="modelselection.gss.distribution.LogTransformedNormalKDEDistribution"/>
	<map from="beast.gss.distribution.MultivariateKDEDistribution" to="modelselection.gss.distribution.MultivariateKDEDistribution"/>
	<map from="beast.gss.distribution.NormalKDEDistribution" to="modelselection.gss.distribution.NormalKDEDistribution"/>

</package>