diff --git a/docs/src/.vitepress/theme/style.css b/docs/src/.vitepress/theme/style.css index 7c32900..2ac6b5c 100644 --- a/docs/src/.vitepress/theme/style.css +++ b/docs/src/.vitepress/theme/style.css @@ -39,6 +39,8 @@ border-radius: 12px; padding: 24px; height: 100%; + position: relative; + padding-bottom: 60px; } .VPFeature a.feature-link { @@ -139,3 +141,13 @@ border-color: var(--vp-c-brand); color: white; } + +/* Feature logo styling */ +.feature-logo { + max-width: 48px; + max-height: 48px; + object-fit: contain; + position: absolute; + bottom: 12px; + right: 12px; +} diff --git a/docs/src/assets/hamburger.svg b/docs/src/assets/hamburger.svg deleted file mode 100644 index 233bf21..0000000 --- a/docs/src/assets/hamburger.svg +++ /dev/null @@ -1 +0,0 @@ - \ No newline at end of file diff --git a/docs/src/assets/rndimg.jpg b/docs/src/assets/rndimg.jpg deleted file mode 100644 index 98be38d..0000000 Binary files a/docs/src/assets/rndimg.jpg and /dev/null differ diff --git a/docs/src/index.md b/docs/src/index.md index bdf96c3..d4ab26a 100644 --- a/docs/src/index.md +++ b/docs/src/index.md @@ -22,7 +22,7 @@ hero:
- +

BioTutorials

These are still a work in progress

@@ -44,34 +44,38 @@ hero:
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BigWig.jl Files

Read and write BigWig format files

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BioAlignments.jl Bioinformatics

Sequence alignment algorithms and data structures

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BioGenerics.jl Other

Generic interface definitions for BioJulia packages

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BioMakie.jl Bioinformatics

Visualize sequences and 3D proteins with ease

+
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BioMarkovChains.jl Bioinformatics

Markov chain models for biological sequences

+
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BioSequences.jl Bioinformatics

Optimized types for working with biological sequences (eg DNA, RNA, proteins)

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BioServices.jl Other

Interface to biological web services and databases

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BioStructures.jl Bioinformatics

Read, write, and manipulate macromolecular structures (PDB, mmCIF)

+
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BioSymbols.jl Bioinformatics

Primitive types for nucleotides and amino acids

+
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BufferIO.jl I/O

IO interface for buffer operations

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CIGARStrings.jl Bioinformatics

Parse and manipulate CIGAR strings for sequence alignments

+
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FASTX.jl Files

Read and write FASTA and FASTQ files

+
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FormatSpecimens.jl Other

Test specimens for biological file formats

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GeneticVariation.jl Bioinformatics

Types and methods for working with genetic variation data

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GenomicAnnotations.jl Bioinformatics

Read and write genomic annotations (GFF3, GenBank, EMBL)

+
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GenomicFeatures.jl Bioinformatics

Genomic interval operations and data structures

+
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GFF3.jl Files

Read and write GFF3 format files

+
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GraphicalFragmentAssembly.jl Files

Read and write GFA format for sequence graphs

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IntervalTrees.jl Other

Efficient interval tree data structures

+
@@ -252,18 +276,20 @@ hero:
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KmerAnalysis.jl Bioinformatics

K-mer counting and analysis tools

+
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Kmers.jl Bioinformatics

Efficient k-mer representation and operations

+
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KWayMerges.jl Other

K-way merge algorithms for sorted iterators

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MemoryViews.jl I/O

Efficient memory views for IO operations

+
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MMTF.jl Files

Read and write MMTF macromolecular structure files

+
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NCBIBlast.jl Bioinformatics

Interface to NCBI BLAST+ for sequence similarity searches

+
@@ -308,18 +338,20 @@ hero:
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PairwiseMappingFormat.jl Files

Read and write PAF alignment format

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PopGen.jl Bioinformatics

Population genetics analysis and simulation

+
@@ -328,46 +360,52 @@ hero:

PopGenCore.jl Bioinformatics

Core types and functions for population genetics

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ProteinSecondaryStructures.jl Bioinformatics

Analyze and predict protein secondary structures

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ReadDatastores.jl Bioinformatics

Efficient storage and access for sequencing read data

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SequenceVariation.jl Bioinformatics

Represent and manipulate sequence variations (mutations, variants)

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SingleCellProjections.jl Bioinformatics

More cells? No Problem! Get UMAPs and other projections of your single cell data using the power of Sparse Matrices

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SubstitutionModels.jl Bioinformatics

Nucleotide and amino acid substitution models for phylogenetics

+
@@ -376,22 +414,25 @@ hero:

WaveletMatrices.jl Other

Wavelet matrix data structure for fast queries

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XAM.jl Files

Read and write SAM and BAM files

+
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XAMAuxData.jl Files

Auxiliary data handling for SAM/BAM files

+
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Contributing to BioJulia

Learn how to contribute to BioJulia packages