From cfd68ae97ab1adfa5787fc390b33492b3768bb21 Mon Sep 17 00:00:00 2001 From: MillenniumFalconMechanic Date: Thu, 4 Jun 2026 10:48:02 -0700 Subject: [PATCH 1/4] chore: update analytics to May 2026 #4857 Co-Authored-By: Claude Opus 4.6 (1M context) --- .../analytics/static_site/charts.py | 6 +- .../analytics/static_site/export.py | 8 +- .../analytics/static_site/fetch.py | 67 +- .../analytics/static_site/template/index.html | 26 +- analytics/anvil-explorer-sheets/constants.py | 4 +- analytics/hca-explorer-sheets/constants.py | 4 +- .../generate_static_site.py | 6 +- .../lungmap-analytics/sheets/constants.py | 4 +- .../sheets/generate_static_site.py | 6 +- .../anvil-explorer/data/access_requests.json | 126 +- .../anvil-explorer/data/custom_events.json | 38 +- .../anvil-explorer/data/event_charts.json | 24 + ...set_analyze_in_terra_requested_detail.json | 40 +- ...ataset_bulk_download_requested_detail.json | 12 +- ...ataset_file_manifest_requested_detail.json | 22 +- .../data/file_download_events.json | 2 +- .../anvil-explorer/data/file_downloads.json | 2 +- .../anvil-explorer/data/filter_selected.json | 1814 +-- gh-pages/anvil-explorer/data/meta.json | 20 +- .../anvil-explorer/data/monthly_traffic.json | 5 + .../anvil-explorer/data/outbound_links.json | 511 +- gh-pages/anvil-explorer/data/pageviews.json | 946 +- gh-pages/anvil-explorer/index.html | 17 +- gh-pages/hca-explorer/data/config.json | 6 +- gh-pages/hca-explorer/data/custom_events.json | 42 +- gh-pages/hca-explorer/data/event_charts.json | 30 +- ...set_analyze_in_terra_requested_detail.json | 154 +- ...ataset_bulk_download_requested_detail.json | 750 +- ...ataset_file_manifest_requested_detail.json | 518 +- .../data/file_download_events.json | 2 +- .../hca-explorer/data/file_downloads.json | 2 +- .../hca-explorer/data/filter_selected.json | 7290 ++++++------ gh-pages/hca-explorer/data/meta.json | 20 +- .../hca-explorer/data/monthly_traffic.json | 5 + .../hca-explorer/data/outbound_links.json | 6561 ++++++----- gh-pages/hca-explorer/data/pageviews.json | 9836 +++++++++-------- gh-pages/hca-explorer/index.html | 17 +- gh-pages/lungmap/data/config.json | 6 +- gh-pages/lungmap/data/custom_events.json | 30 +- gh-pages/lungmap/data/event_charts.json | 30 +- ...set_analyze_in_terra_requested_detail.json | 6 - ...ataset_bulk_download_requested_detail.json | 18 +- ...ataset_file_manifest_requested_detail.json | 10 +- .../lungmap/data/file_download_events.json | 2 +- gh-pages/lungmap/data/file_downloads.json | 2 +- gh-pages/lungmap/data/filter_selected.json | 118 +- gh-pages/lungmap/data/meta.json | 20 +- gh-pages/lungmap/data/monthly_traffic.json | 5 + gh-pages/lungmap/data/outbound_links.json | 112 +- gh-pages/lungmap/data/pageviews.json | 444 +- gh-pages/lungmap/index.html | 17 +- 51 files changed, 15613 insertions(+), 14150 deletions(-) diff --git a/analytics/analytics_package/analytics/static_site/charts.py b/analytics/analytics_package/analytics/static_site/charts.py index bb9724ac3..95b6c5fd3 100644 --- a/analytics/analytics_package/analytics/static_site/charts.py +++ b/analytics/analytics_package/analytics/static_site/charts.py @@ -20,21 +20,21 @@ def make_event_charts(entity_label, entity_path, chart_start): "title": "Export to Terra", "series": [ {"label": f"Single {entity_label}", "event_key": "dataset_analyze_in_terra_requested", "event_name": "dataset_analyze_in_terra_requested"}, - {"label": "Cross-Dataset", "event_key": "index_analyze_in_terra_requested", "event_name": "index_analyze_in_terra_requested"}, + {"label": f"Cross-{entity_label}", "event_key": "index_analyze_in_terra_requested", "event_name": "index_analyze_in_terra_requested"}, ], }, { "title": "curl Command", "series": [ {"label": f"Single {entity_label}", "event_key": "dataset_bulk_download_requested", "event_name": "bulk_download_requested", "page_path_regex": rf"^/{path_segment}/[0-9a-f-]+"}, - {"label": "Cross-Dataset", "event_key": "index_bulk_download_requested", "event_name": "bulk_download_requested", "page_path_regex": rf"^(?!/{path_segment}/[0-9a-f-]+)"}, + {"label": f"Cross-{entity_label}", "event_key": "index_bulk_download_requested", "event_name": "bulk_download_requested", "page_path_regex": rf"^(?!/{path_segment}/[0-9a-f-]+)"}, ], }, { "title": "File Manifest", "series": [ {"label": f"Single {entity_label}", "event_key": "dataset_file_manifest_requested", "event_name": "dataset_file_manifest_requested"}, - {"label": "Cross-Dataset", "event_key": "index_file_manifest_requested", "event_name": "index_file_manifest_requested"}, + {"label": f"Cross-{entity_label}", "event_key": "index_file_manifest_requested", "event_name": "index_file_manifest_requested"}, ], }, ], diff --git a/analytics/analytics_package/analytics/static_site/export.py b/analytics/analytics_package/analytics/static_site/export.py index d78958c40..78f8a605e 100644 --- a/analytics/analytics_package/analytics/static_site/export.py +++ b/analytics/analytics_package/analytics/static_site/export.py @@ -148,11 +148,14 @@ def export_data(data, config, current_month, analytics_start, custom_events, out for event in custom_events: key = event_key(event) stats = data.get(f"event_{key}", {"current": 0, "prior": 0, "change": None}) - events_output.append({ + event_entry = { "event_name": key, "label": event["label"], **stats, - }) + } + if event.get("detail_file_column"): + event_entry["detail_file_column"] = event["detail_file_column"] + events_output.append(event_entry) with open(os.path.join(output_dir, "custom_events.json"), "w") as f: json.dump(events_output, f, indent=2) @@ -211,7 +214,6 @@ def export_data(data, config, current_month, analytics_start, custom_events, out "prior_month_end": dates.get("end_prior", ""), "analytics_start": analytics_start, "sessions": data.get("sessions", {}), - "engaged_sessions": data.get("engaged_sessions", {}), "engagement_rate": data.get("engagement_rate", {}), } diff --git a/analytics/analytics_package/analytics/static_site/fetch.py b/analytics/analytics_package/analytics/static_site/fetch.py index 1ff92b9f3..67084ad41 100644 --- a/analytics/analytics_package/analytics/static_site/fetch.py +++ b/analytics/analytics_package/analytics/static_site/fetch.py @@ -22,11 +22,6 @@ "alias": "Engagement Rate", } -METRIC_ENGAGED_SESSIONS = { - "id": "engagedSessions", - "alias": "Engaged Sessions", -} - # Regex matching page paths that are clearly not real pages (bot probes, # broken markdown links, asset requests, etc.). SUSPICIOUS_PAGE_PATH_RE = re.compile( @@ -49,11 +44,13 @@ def event_key(event): return event.get("key", event["event_name"]) -def _count_events(event_name, params, page_path_regex=None): - """Fetch event count, optionally filtered by page path regex.""" +def _count_events(event_name, params, page_path_regex=None, click_url_regex=None): + """Fetch event count, optionally filtered by page path and/or click URL regex.""" dimensions = [DIMENSION_EVENT_NAME] if page_path_regex: dimensions.append(DIMENSION_PAGE_PATH) + if click_url_regex: + dimensions.append(DIMENSION_CUSTOM_URL) df = get_data_df_from_fields( [METRIC_EVENT_COUNT], @@ -66,14 +63,15 @@ def _count_events(event_name, params, page_path_regex=None): return 0 if page_path_regex: - pattern = re.compile(page_path_regex) - mask = df[DIMENSION_PAGE_PATH["alias"]].str.match(pattern, na=False) - return int(df.loc[mask, METRIC_EVENT_COUNT["alias"]].sum()) + df = df[df[DIMENSION_PAGE_PATH["alias"]].str.match(page_path_regex, na=False)] + + if click_url_regex: + df = df[df[DIMENSION_CUSTOM_URL["alias"]].str.contains(click_url_regex, na=False)] return int(df[METRIC_EVENT_COUNT["alias"]].sum()) -def get_custom_event_change(event_name, params_current, params_prior, page_path_regex=None): +def get_custom_event_change(event_name, params_current, params_prior, page_path_regex=None, click_url_regex=None): """Fetch a custom event count with month-over-month change. Args: @@ -81,12 +79,13 @@ def get_custom_event_change(event_name, params_current, params_prior, page_path_ params_current: Analytics params for the current period. params_prior: Analytics params for the prior period. page_path_regex: Optional regex to filter by page path. + click_url_regex: Optional regex to filter by click URL. Returns: Dict with "current", "prior", and "change" keys. """ - current_count = _count_events(event_name, params_current, page_path_regex) - prior_count = _count_events(event_name, params_prior, page_path_regex) + current_count = _count_events(event_name, params_current, page_path_regex, click_url_regex) + prior_count = _count_events(event_name, params_prior, page_path_regex, click_url_regex) change = None if prior_count > 0: @@ -95,21 +94,26 @@ def get_custom_event_change(event_name, params_current, params_prior, page_path_ return {"current": current_count, "prior": prior_count, "change": change} -def get_event_detail_table(event_name, params, page_path_regex=None): +def get_event_detail_table(event_name, params, page_path_regex=None, click_url_regex=None): """Fetch event details broken down by page path and entity name. Args: event_name: GA4 event name. params: Analytics params for the period. page_path_regex: Optional regex to filter by page path. + click_url_regex: Optional regex to filter by click URL. Returns: List of dicts with "page_path", "entity_name", and "count" keys, - sorted by count descending. + sorted by count descending. Includes "click_url" when click_url_regex is used. """ + dimensions = [DIMENSION_EVENT_NAME, DIMENSION_PAGE_PATH, DIMENSION_ENTITY_NAME] + if click_url_regex: + dimensions.append(DIMENSION_CUSTOM_URL) + df = get_data_df_from_fields( [METRIC_EVENT_COUNT], - [DIMENSION_EVENT_NAME, DIMENSION_PAGE_PATH, DIMENSION_ENTITY_NAME], + dimensions, dimension_filter=f"eventName=={event_name}", **params, ) @@ -118,14 +122,25 @@ def get_event_detail_table(event_name, params, page_path_regex=None): return [] if page_path_regex: - pattern = re.compile(page_path_regex) - df = df[df[DIMENSION_PAGE_PATH["alias"]].str.match(pattern, na=False)] + df = df[df[DIMENSION_PAGE_PATH["alias"]].str.match(page_path_regex, na=False)] + + if click_url_regex: + df = df[df[DIMENSION_CUSTOM_URL["alias"]].str.contains(click_url_regex, na=False)] if len(df) == 0: return [] - result = df[[DIMENSION_PAGE_PATH["alias"], DIMENSION_ENTITY_NAME["alias"], METRIC_EVENT_COUNT["alias"]]].copy() - result.columns = ["page_path", "entity_name", "count"] + export_cols = [DIMENSION_PAGE_PATH["alias"], DIMENSION_ENTITY_NAME["alias"]] + output_names = ["page_path", "entity_name"] + if click_url_regex: + export_cols.append(DIMENSION_CUSTOM_URL["alias"]) + output_names.append("click_url") + export_cols.append(METRIC_EVENT_COUNT["alias"]) + output_names.append("count") + + result = df[export_cols].copy() + result.columns = output_names + result["count"] = result["count"].astype(int) result = result.sort_values("count", ascending=False) return result.to_dict(orient="records") @@ -396,15 +411,13 @@ def fetch_data( print("Fetching sessions and engagement data...") df_sessions_current = get_data_df_from_fields( - [METRIC_SESSIONS, METRIC_ENGAGED_SESSIONS, METRIC_ENGAGEMENT_RATE], [], **params, + [METRIC_SESSIONS, METRIC_ENGAGEMENT_RATE], [], **params, ) df_sessions_prior = get_data_df_from_fields( - [METRIC_SESSIONS, METRIC_ENGAGED_SESSIONS, METRIC_ENGAGEMENT_RATE], [], **params_prior, + [METRIC_SESSIONS, METRIC_ENGAGEMENT_RATE], [], **params_prior, ) sessions_current = int(df_sessions_current[METRIC_SESSIONS["alias"]].sum()) if len(df_sessions_current) > 0 else 0 sessions_prior = int(df_sessions_prior[METRIC_SESSIONS["alias"]].sum()) if len(df_sessions_prior) > 0 else 0 - engaged_sessions_current = int(df_sessions_current[METRIC_ENGAGED_SESSIONS["alias"]].sum()) if len(df_sessions_current) > 0 else 0 - engaged_sessions_prior = int(df_sessions_prior[METRIC_ENGAGED_SESSIONS["alias"]].sum()) if len(df_sessions_prior) > 0 else 0 engagement_current = float(df_sessions_current[METRIC_ENGAGEMENT_RATE["alias"]].mean()) if len(df_sessions_current) > 0 else 0 engagement_prior = float(df_sessions_prior[METRIC_ENGAGEMENT_RATE["alias"]].mean()) if len(df_sessions_prior) > 0 else 0 @@ -440,10 +453,6 @@ def fetch_data( "current": sessions_current, "prior": sessions_prior, }, - "engaged_sessions": { - "current": engaged_sessions_current, - "prior": engaged_sessions_prior, - }, "engagement_rate": { "current": engagement_current, "prior": engagement_prior, @@ -470,12 +479,14 @@ def fetch_data( data[f"event_{key}"] = get_custom_event_change( event["event_name"], params, params_prior, page_path_regex=event.get("page_path_regex"), + click_url_regex=event.get("click_url_regex"), ) if event.get("detail_table"): print(f"Fetching {event['label']} detail table...") data[f"event_{key}_detail"] = get_event_detail_table( event["event_name"], params, page_path_regex=event.get("page_path_regex"), + click_url_regex=event.get("click_url_regex"), ) if event_charts: diff --git a/analytics/analytics_package/analytics/static_site/template/index.html b/analytics/analytics_package/analytics/static_site/template/index.html index fca0fdf14..839269a28 100644 --- a/analytics/analytics_package/analytics/static_site/template/index.html +++ b/analytics/analytics_package/analytics/static_site/template/index.html @@ -489,11 +489,10 @@

Filter Selections

const previous = traffic[1] || {}; const sessions = meta.sessions || {}; - const engagedSessions = meta.engaged_sessions || {}; const engagement = meta.engagement_rate || {}; const usersChange = pctChange(latest.users, previous.users); - const engagedSessionsChange = pctChange(engagedSessions.current, engagedSessions.prior); + const sessionsChange = pctChange(sessions.current, sessions.prior); const pageviewsChange = pctChange(latest.pageviews, previous.pageviews); const engagementChange = pctChange(engagement.current, engagement.prior); @@ -511,9 +510,9 @@

Filter Selections

`Total number of unique individuals who visited your site during ${monthName}.` ) + statCard( - formatNumber(engagedSessions.current != null ? engagedSessions.current : (sessions.current || 0)), 'Engaged Sessions', - engagedSessionsChange, - `Sessions where users actively engaged with your site during ${monthName} (stayed 10+ seconds, viewed 2+ pages, or triggered a conversion). Learn more.` + formatNumber(sessions.current || 0), 'User Sessions', + sessionsChange, + `Total number of visits to your site during ${monthName}. A single user can have multiple sessions.` ) + statCard( formatNumber(latest.pageviews), 'Pageviews', @@ -580,7 +579,8 @@

Filter Selections

if (chartDataByKey[card.event_key] && chartDataByKey[card.event_key].length > 0) { const canvasId = `event-trend-chart-${chartIndex++}`; const parts = card.label.split('\n'); - const chartTitle = escapeHtml(rowLabel) + ' Over Time' + (parts[1] ? ` (${escapeHtml(parts[1].replace(/[()]/g, ''))})` : ''); + const cardLabel = parts[0]; + const chartTitle = escapeHtml(cardLabel) + ' Over Time' + (parts[1] ? ` (${escapeHtml(parts[1].replace(/[()]/g, ''))})` : ''); html += `
@@ -662,6 +662,7 @@

${chartTitle}

if (!detail) continue; const hasDatasetTitle = detail.some(r => r.dataset_title); + const hasClickUrl = detail.some(r => r.click_url); const isEmpty = detail.length === 0; let tableContent; @@ -672,9 +673,12 @@

${chartTitle}

const label = r.dataset_title || r.entity_name || r.page_path || '-'; const link = r.page_path ? `${siteBase}${r.page_path.replace(/\/export.*/, '')}` : null; const cell = link ? `${escapeHtml(label)}` : escapeHtml(label); - return `${cell}${formatNumber(r.count)}`; + const fileTd = hasClickUrl ? `${escapeHtml(r.file_label || fileNameFromUrl(r.click_url))}` : ''; + return `${cell}${fileTd}${formatNumber(r.count)}`; }).join(''); - tableContent = `${rows}
${escapeHtml(entityLabel)}Count
`; + const fileColLabel = event.detail_file_column || 'File'; + const fileHeader = hasClickUrl ? `${escapeHtml(fileColLabel)}` : ''; + tableContent = `${fileHeader}${rows}
${escapeHtml(entityLabel)}Count
`; } else { const rows = detail.map(r => { const raw = r.entity_name && r.entity_name !== '(not set)' ? r.entity_name : null; @@ -945,6 +949,12 @@

${escapeHtml(event.label)} } } + function fileNameFromUrl(url) { + if (!url) return '-'; + const parts = url.split('/'); + return parts[parts.length - 1] || url; + } + function formatChange(change) { if (change == null) return '-'; return (change >= 0 ? '+' : '') + (change * 100).toFixed(1) + '%'; diff --git a/analytics/anvil-explorer-sheets/constants.py b/analytics/anvil-explorer-sheets/constants.py index fee4e9bef..96a58bb7d 100644 --- a/analytics/anvil-explorer-sheets/constants.py +++ b/analytics/anvil-explorer-sheets/constants.py @@ -1,8 +1,8 @@ # CHANGE THESE VALUES TO GENERATE NEW REPORTS # The date of the current month to report on (yyyy-mm) -CURRENT_MONTH = "2026-04" +CURRENT_MONTH = "2026-05" # The name of the folder in which to save the report -PARENT_FOLDER_NAME = "April 2026" +PARENT_FOLDER_NAME = "May 2026" # The name of the spreadsheet with the report SHEET_NAME = "AnVIL Explorer" diff --git a/analytics/hca-explorer-sheets/constants.py b/analytics/hca-explorer-sheets/constants.py index 06a3c13d2..0591eed12 100644 --- a/analytics/hca-explorer-sheets/constants.py +++ b/analytics/hca-explorer-sheets/constants.py @@ -1,8 +1,8 @@ # CHANGE THESE VALUES TO GENERATE NEW REPORTS # The date of the current month to report on (yyyy-mm) -CURRENT_MONTH = "2026-04" +CURRENT_MONTH = "2026-05" # The name of the folder in which to save the report -PARENT_FOLDER_NAME = "April 2026" +PARENT_FOLDER_NAME = "May 2026" # The name of the spreadsheet with the report SHEET_NAME = "HCA Explorer" diff --git a/analytics/hca-explorer-sheets/generate_static_site.py b/analytics/hca-explorer-sheets/generate_static_site.py index 2a078497d..e9650f812 100644 --- a/analytics/hca-explorer-sheets/generate_static_site.py +++ b/analytics/hca-explorer-sheets/generate_static_site.py @@ -48,11 +48,11 @@ def resolve_project_titles(data): "file_downloads_position": 3, "event_counts": [ {"label": "Export to Terra\n(Single Project)", "event_key": "dataset_analyze_in_terra_requested"}, - {"label": "Export to Terra\n(Cross-Dataset)", "event_key": "index_analyze_in_terra_requested"}, + {"label": "Export to Terra\n(Cross-Project)", "event_key": "index_analyze_in_terra_requested"}, {"label": "curl Command\n(Single Project)", "event_key": "dataset_bulk_download_requested"}, - {"label": "curl Command\n(Cross-Dataset)", "event_key": "index_bulk_download_requested"}, + {"label": "curl Command\n(Cross-Project)", "event_key": "index_bulk_download_requested"}, {"label": "File Manifest\n(Single Project)", "event_key": "dataset_file_manifest_requested"}, - {"label": "File Manifest\n(Cross-Dataset)", "event_key": "index_file_manifest_requested"}, + {"label": "File Manifest\n(Cross-Project)", "event_key": "index_file_manifest_requested"}, ], }, property_id=HCA_ID, diff --git a/analytics/lungmap-analytics/sheets/constants.py b/analytics/lungmap-analytics/sheets/constants.py index 4fc02bc5c..2a3ff216b 100644 --- a/analytics/lungmap-analytics/sheets/constants.py +++ b/analytics/lungmap-analytics/sheets/constants.py @@ -1,8 +1,8 @@ # CHANGE THESE VALUES TO GENERATE NEW REPORTS # The date of the current month to report on (yyyy-mm) -CURRENT_MONTH = "2026-04" +CURRENT_MONTH = "2026-05" # The name of the folder in which to save the report -PARENT_FOLDER_NAME = "April 2026" +PARENT_FOLDER_NAME = "May 2026" # The name of the spreadsheet with the report SHEET_NAME = "Lungmap Data Browser" diff --git a/analytics/lungmap-analytics/sheets/generate_static_site.py b/analytics/lungmap-analytics/sheets/generate_static_site.py index 6f3854c24..c07d15deb 100644 --- a/analytics/lungmap-analytics/sheets/generate_static_site.py +++ b/analytics/lungmap-analytics/sheets/generate_static_site.py @@ -48,11 +48,11 @@ def resolve_project_titles(data): "file_downloads_position": 3, "event_counts": [ {"label": "Export to Terra\n(Single Project)", "event_key": "dataset_analyze_in_terra_requested"}, - {"label": "Export to Terra\n(Cross-Dataset)", "event_key": "index_analyze_in_terra_requested"}, + {"label": "Export to Terra\n(Cross-Project)", "event_key": "index_analyze_in_terra_requested"}, {"label": "curl Command\n(Single Project)", "event_key": "dataset_bulk_download_requested"}, - {"label": "curl Command\n(Cross-Dataset)", "event_key": "index_bulk_download_requested"}, + {"label": "curl Command\n(Cross-Project)", "event_key": "index_bulk_download_requested"}, {"label": "File Manifest\n(Single Project)", "event_key": "dataset_file_manifest_requested"}, - {"label": "File Manifest\n(Cross-Dataset)", "event_key": "index_file_manifest_requested"}, + {"label": "File Manifest\n(Cross-Project)", "event_key": "index_file_manifest_requested"}, ], }, property_id=LUNGMAP_ID, diff --git a/gh-pages/anvil-explorer/data/access_requests.json b/gh-pages/anvil-explorer/data/access_requests.json index c216cacf5..07eab2a55 100644 --- a/gh-pages/anvil-explorer/data/access_requests.json +++ b/gh-pages/anvil-explorer/data/access_requests.json @@ -2,97 +2,139 @@ { "page_path": "/datasets/329c1f46-c814-4c2d-b4b1-c01b724f76e1", "click_url": "https://duos.org/dataset/DUOS-000483", - "count": 4, + "count": 6, "dataset_title": "ANVIL_ALSCompute_Collection_GRU" }, { "page_path": "/datasets/b9ff5c04-4dd0-4764-b189-e9cfe49b3063", "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs000424", - "count": 4, + "count": 6, "dataset_title": "ANVIL_GTEx_v11_hg38" }, + { + "page_path": "/datasets/cb707deb-aa9d-4783-84ce-ec700223f2bc", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs001642", + "count": 4, + "dataset_title": "ANVIL_CCDG_Broad_AI_IBD_Brant_HMB_WGS" + }, + { + "page_path": "/datasets/5aacd1a5-8963-4489-8352-9e425e92e5df", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs000424", + "count": 4, + "dataset_title": "ANVIL_GTEx_v10_hg38" + }, + { + "page_path": "/datasets/094f3cac-3475-464f-8cea-eb9c09577848", + "click_url": "https://duos.org/dataset/DUOS-000484", + "count": 3, + "dataset_title": "ANVIL_ALSCompute_Collection_HMB" + }, { "page_path": "/datasets/329c1f46-c814-4c2d-b4b1-c01b724f76e1", "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003184", - "count": 2, + "count": 3, "dataset_title": "ANVIL_ALSCompute_Collection_GRU" }, { - "page_path": "/datasets/56ca3afc-e1cd-441b-85f8-3fe0deb57ad6", - "click_url": "https://duos.org/dataset/DUOS-000663", + "page_path": "/datasets/c38552a2-ce6e-475a-af2f-619640052d87", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs001642", + "count": 3, + "dataset_title": "ANVIL_CCDG_Broad_AI_IBD_Cho_WGS" + }, + { + "page_path": "/datasets/6ea221e5-0f83-4b5f-ad8b-49a5dbdba837", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003444", + "count": 3, + "dataset_title": "ANVIL_DepMap_HMB" + }, + { + "page_path": "/datasets/a00842c8-12f8-4f92-a7b3-01bb73ffd4e4", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs001300", "count": 2, - "dataset_title": "AnVIL_CMH_GAFK_R5" + "dataset_title": "AnVIL_NIA_CARD_LR_WGS_NABEC_GRU_V2" }, { - "page_path": "/datasets/5aacd1a5-8963-4489-8352-9e425e92e5df", - "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs000424", + "page_path": "/datasets/0b740f36-28d6-4e02-8165-ad0e9674bbf6", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003181", "count": 2, - "dataset_title": "ANVIL_GTEx_v10_hg38" + "dataset_title": "ANVIL_NIA_CARD_LR_WGS_NABEC_GRU" }, { - "page_path": "/datasets/d4079d07-421c-4233-afe3-f17c8f11503a", - "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003047", + "page_path": "/datasets/ffd425cc-038b-4fc5-a143-f054118b6905", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs000424", "count": 2, - "dataset_title": "ANVIL_GREGoR_R01_HMB" + "dataset_title": "ANVIL_GTEx_V7_hg19" + }, + { + "page_path": "/datasets/7361d67c-829d-49e9-8e59-c3c55bf554f3", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs000424", + "count": 1, + "dataset_title": "ANVIL_GTEx_V9_hg38" }, { - "page_path": "/datasets/3db7b5ed-6593-4c02-8ccb-270b6a1a44c7", - "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003537", + "page_path": "/datasets/a4e936d1-d81a-475d-95be-b5cd41de921d", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs000979", "count": 1, - "dataset_title": "ANVIL_HudsonAlpha_LR_v1_GRU" + "dataset_title": "AnVIL_NIA_CARD_LR_WGS_HBCC" }, { - "page_path": "/datasets/4f70fe5e-eea9-4ad8-bade-d1912f207c47", - "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003047", + "page_path": "/datasets/b5d99670-c00c-48a5-bc1e-7a577be9d8d8", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003444", "count": 1, - "dataset_title": "4f70fe5e-eea9-4ad8-bade-d1912f207c47" + "dataset_title": "AnVIL_DepMap_HMB_MDS_R3" }, { - "page_path": "/datasets/591f7dd1-9b6b-4f40-a753-e20e005d2b32", - "click_url": "https://duos.org/dataset/DUOS-000379", + "page_path": "/datasets/b62db4f6-f1b9-468b-8bda-5a92504034fd", + "click_url": "https://duos.org/dataset/DUOS-000234", "count": 1, - "dataset_title": "ANVIL_CMG_YALE_DS_MC" + "dataset_title": "ANVIL_ALS_FTD_DEMENTIA_SEQ_GRU_v1" }, { - "page_path": "/datasets/6ea221e5-0f83-4b5f-ad8b-49a5dbdba837", - "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003444", + "page_path": "/datasets/5c075780-ccaa-4fc6-8fb0-ca6a17dda57b", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs001272", "count": 1, - "dataset_title": "ANVIL_DepMap_HMB" + "dataset_title": "ANVIL_CMG_Broad_Brain_NeuroDev_WES" }, { - "page_path": "/datasets/6ea221e5-0f83-4b5f-ad8b-49a5dbdba837", - "click_url": "https://duos.org/dataset/DUOS-000482", + "page_path": "/datasets/b9ff5c04-4dd0-4764-b189-e9cfe49b3063", + "click_url": "https://duos.org/dataset/DUOS-000780", "count": 1, - "dataset_title": "ANVIL_DepMap_HMB" + "dataset_title": "ANVIL_GTEx_v11_hg38" }, { - "page_path": "/datasets/7361d67c-829d-49e9-8e59-c3c55bf554f3", - "click_url": "https://duos.org/dataset/DUOS-000238", + "page_path": "/datasets/47924183-c38f-4a30-8a24-3dad9d7d4b84", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs002018", "count": 1, - "dataset_title": "ANVIL_GTEx_V9_hg38" + "dataset_title": "ANVIL_CCDG_Broad_CVD_EOCAD_PartnersBiobank_HMB_Arrays" }, { - "page_path": "/datasets/a00842c8-12f8-4f92-a7b3-01bb73ffd4e4", - "click_url": "https://duos.org/dataset/DUOS-000744", + "page_path": "/datasets/3ddd56ca-29d5-4f22-81a5-c182ec827d07", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs001489", "count": 1, - "dataset_title": "AnVIL_NIA_CARD_LR_WGS_NABEC_GRU_V2" + "dataset_title": "ANVIL_CCDG_Broad_NP_Epilepsy_USACHP_GRU_WES" }, { - "page_path": "/datasets/b9ff5c04-4dd0-4764-b189-e9cfe49b3063", - "click_url": "https://duos.org/dataset/DUOS-000780", + "page_path": "/datasets/d78b9626-6214-4f51-90d8-febd4f081f18", + "click_url": "https://duos.org/dataset/DUOS-000158", "count": 1, - "dataset_title": "ANVIL_GTEx_v11_hg38" + "dataset_title": "ANVIL_GTEx_BCM_GRU_CoRSIVs" + }, + { + "page_path": "/datasets/e91d30a6-8394-4249-b62b-822fab912b9b", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003444", + "count": 1, + "dataset_title": "AnVIL_DepMap_GRU" }, { - "page_path": "/datasets/c7822863-e4e1-4f6f-ba9d-c4766436c4e5", - "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs003047", + "page_path": "/datasets/fe7091a5-0784-471a-8e12-84aa686215db", + "click_url": "https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?adddataset=phs000424", "count": 1, - "dataset_title": "c7822863-e4e1-4f6f-ba9d-c4766436c4e5" + "dataset_title": "ANVIL_GTEx_V8_hg38" }, { - "page_path": "/datasets/d4079d07-421c-4233-afe3-f17c8f11503a", - "click_url": "https://duos.org/dataset/DUOS-000370", + "page_path": "/datasets/a00842c8-12f8-4f92-a7b3-01bb73ffd4e4", + "click_url": "https://duos.org/dataset/DUOS-000744", "count": 1, - "dataset_title": "ANVIL_GREGoR_R01_HMB" + "dataset_title": "AnVIL_NIA_CARD_LR_WGS_NABEC_GRU_V2" } ] \ No newline at end of file diff --git a/gh-pages/anvil-explorer/data/custom_events.json b/gh-pages/anvil-explorer/data/custom_events.json index 072f77ccb..2fb1155ff 100644 --- a/gh-pages/anvil-explorer/data/custom_events.json +++ b/gh-pages/anvil-explorer/data/custom_events.json @@ -2,50 +2,50 @@ { "event_name": "filter_selected", "label": "Filter Selections", - "current": 488, - "prior": 538, - "change": -0.09293680297397769 + "current": 254, + "prior": 488, + "change": -0.47950819672131145 }, { "event_name": "index_bulk_download_requested", "label": "Cohort curl Download Requests", - "current": 11, - "prior": 4, - "change": 1.75 + "current": 1, + "prior": 11, + "change": -0.9090909090909091 }, { "event_name": "index_file_manifest_requested", "label": "Cohort File Manifest Requests", "current": 2, - "prior": 9, - "change": -0.7777777777777778 + "prior": 2, + "change": 0.0 }, { "event_name": "index_analyze_in_terra_requested", "label": "Cohort Analyze in Terra Requests", "current": 2, - "prior": 7, - "change": -0.7142857142857143 + "prior": 2, + "change": 0.0 }, { "event_name": "dataset_analyze_in_terra_requested", "label": "Dataset Analyze in Terra Requests", - "current": 6, - "prior": 1, - "change": 5.0 + "current": 7, + "prior": 6, + "change": 0.16666666666666666 }, { "event_name": "dataset_bulk_download_requested", "label": "Dataset curl Download Requests", - "current": 6, - "prior": 5, - "change": 0.2 + "current": 3, + "prior": 6, + "change": -0.5 }, { "event_name": "dataset_file_manifest_requested", "label": "Dataset File Manifest Requests", - "current": 6, - "prior": 2, - "change": 2.0 + "current": 7, + "prior": 6, + "change": 0.16666666666666666 } ] \ No newline at end of file diff --git a/gh-pages/anvil-explorer/data/event_charts.json b/gh-pages/anvil-explorer/data/event_charts.json index 382bc423d..6dad4b36d 100644 --- a/gh-pages/anvil-explorer/data/event_charts.json +++ b/gh-pages/anvil-explorer/data/event_charts.json @@ -15,6 +15,10 @@ { "month": "2026-04", "count": 6 + }, + { + "month": "2026-05", + "count": 7 } ] }, @@ -29,6 +33,10 @@ { "month": "2026-04", "count": 2 + }, + { + "month": "2026-05", + "count": 2 } ] } @@ -48,6 +56,10 @@ { "month": "2026-04", "count": 6 + }, + { + "month": "2026-05", + "count": 3 } ] }, @@ -62,6 +74,10 @@ { "month": "2026-04", "count": 11 + }, + { + "month": "2026-05", + "count": 1 } ] } @@ -81,6 +97,10 @@ { "month": "2026-04", "count": 6 + }, + { + "month": "2026-05", + "count": 7 } ] }, @@ -95,6 +115,10 @@ { "month": "2026-04", "count": 2 + }, + { + "month": "2026-05", + "count": 2 } ] } diff --git a/gh-pages/anvil-explorer/data/event_dataset_analyze_in_terra_requested_detail.json b/gh-pages/anvil-explorer/data/event_dataset_analyze_in_terra_requested_detail.json index 1c3ca05e8..33db1657a 100644 --- a/gh-pages/anvil-explorer/data/event_dataset_analyze_in_terra_requested_detail.json +++ b/gh-pages/anvil-explorer/data/event_dataset_analyze_in_terra_requested_detail.json @@ -1,20 +1,44 @@ [ { - "page_path": "/datasets/e5aee011-bdb3-4caa-954c-a46678656270/export/export-to-terra", + "page_path": "/datasets/094f3cac-3475-464f-8cea-eb9c09577848/export/export-to-terra", "entity_name": "(not set)", - "count": 3, - "dataset_title": "ANVIL_GTEx_public_data" + "count": 1, + "dataset_title": "ANVIL_ALSCompute_Collection_HMB" + }, + { + "page_path": "/datasets/329c1f46-c814-4c2d-b4b1-c01b724f76e1/export/export-to-terra", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "ANVIL_ALSCompute_Collection_GRU" + }, + { + "page_path": "/datasets/63d97e58-a825-4b93-a9a7-0d9d165dc826/export/export-to-terra", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "ANVIL_1000G_high_coverage_2019" }, { - "page_path": "/datasets/b9ff5c04-4dd0-4764-b189-e9cfe49b3063/export/export-to-terra", + "page_path": "/datasets/b62db4f6-f1b9-468b-8bda-5a92504034fd/export/export-to-terra", "entity_name": "(not set)", - "count": 2, - "dataset_title": "ANVIL_GTEx_v11_hg38" + "count": 1, + "dataset_title": "ANVIL_ALS_FTD_DEMENTIA_SEQ_GRU_v1" + }, + { + "page_path": "/datasets/c38552a2-ce6e-475a-af2f-619640052d87/export/export-to-terra", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "ANVIL_CCDG_Broad_AI_IBD_Cho_WGS" + }, + { + "page_path": "/datasets/d976c0b2-712f-4c0b-a0cf-cd26bbdbc8a0/export/export-to-terra", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "ANVIL_ALS_FTD_ALS_AssociatedGenes_GRU_v1" }, { - "page_path": "/datasets/fe7091a5-0784-471a-8e12-84aa686215db/export/export-to-terra", + "page_path": "/datasets/e91d30a6-8394-4249-b62b-822fab912b9b/export/export-to-terra", "entity_name": "(not set)", "count": 1, - "dataset_title": "ANVIL_GTEx_V8_hg38" + "dataset_title": "AnVIL_DepMap_GRU" } ] \ No newline at end of file diff --git a/gh-pages/anvil-explorer/data/event_dataset_bulk_download_requested_detail.json b/gh-pages/anvil-explorer/data/event_dataset_bulk_download_requested_detail.json index c7d27db4b..e74320057 100644 --- a/gh-pages/anvil-explorer/data/event_dataset_bulk_download_requested_detail.json +++ b/gh-pages/anvil-explorer/data/event_dataset_bulk_download_requested_detail.json @@ -1,14 +1,14 @@ [ { - "page_path": "/datasets/303b5a92-57c8-4df2-8331-8ff308f21293/export/get-curl-command", - "entity_name": "(not set)", - "count": 5, - "dataset_title": "ANVIL_1000G_PRIMED_data_model" + "page_path": "/datasets/e5aee011-bdb3-4caa-954c-a46678656270/export/get-curl-command", + "entity_name": "datasets", + "count": 2, + "dataset_title": "ANVIL_GTEx_public_data" }, { - "page_path": "/datasets/63d97e58-a825-4b93-a9a7-0d9d165dc826/export/get-curl-command", + "page_path": "/datasets/1426a206-fcb1-4a07-9b47-32f06ef8cf8d/export/get-curl-command", "entity_name": "datasets", "count": 1, - "dataset_title": "ANVIL_1000G_high_coverage_2019" + "dataset_title": "ANVIL_T2T_CHRY" } ] \ No newline at end of file diff --git a/gh-pages/anvil-explorer/data/event_dataset_file_manifest_requested_detail.json b/gh-pages/anvil-explorer/data/event_dataset_file_manifest_requested_detail.json index 81d231527..a66468adc 100644 --- a/gh-pages/anvil-explorer/data/event_dataset_file_manifest_requested_detail.json +++ b/gh-pages/anvil-explorer/data/event_dataset_file_manifest_requested_detail.json @@ -1,14 +1,32 @@ [ + { + "page_path": "/datasets/1426a206-fcb1-4a07-9b47-32f06ef8cf8d/export/download-manifest", + "entity_name": "(not set)", + "count": 3, + "dataset_title": "ANVIL_T2T_CHRY" + }, + { + "page_path": "/datasets/0b740f36-28d6-4e02-8165-ad0e9674bbf6/export/download-manifest", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "ANVIL_NIA_CARD_LR_WGS_NABEC_GRU" + }, { "page_path": "/datasets/303b5a92-57c8-4df2-8331-8ff308f21293/export/download-manifest", "entity_name": "(not set)", - "count": 4, + "count": 1, "dataset_title": "ANVIL_1000G_PRIMED_data_model" }, { "page_path": "/datasets/b9ff5c04-4dd0-4764-b189-e9cfe49b3063/export/download-manifest", "entity_name": "(not set)", - "count": 2, + "count": 1, "dataset_title": "ANVIL_GTEx_v11_hg38" + }, + { + "page_path": "/datasets/fe7091a5-0784-471a-8e12-84aa686215db/export/download-manifest", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "ANVIL_GTEx_V8_hg38" } ] \ No newline at end of file diff --git a/gh-pages/anvil-explorer/data/file_download_events.json b/gh-pages/anvil-explorer/data/file_download_events.json index 4544dfaf7..62adf1156 100644 --- a/gh-pages/anvil-explorer/data/file_download_events.json +++ b/gh-pages/anvil-explorer/data/file_download_events.json @@ -1,3 +1,3 @@ { - "total": 1 + "total": 2 } \ No newline at end of file diff --git a/gh-pages/anvil-explorer/data/file_downloads.json b/gh-pages/anvil-explorer/data/file_downloads.json index 62adf1156..d7921b1b4 100644 --- a/gh-pages/anvil-explorer/data/file_downloads.json +++ b/gh-pages/anvil-explorer/data/file_downloads.json @@ -1,3 +1,3 @@ { - 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"page": "/datasets/dbca8df8-53e9-495f-8015-59695ff35da3", + "page": "/datasets/63d97e58-a825-4b93-a9a7-0d9d165dc826/export/get-curl-command", "views": 0, "change": -1.0 }, { - "page": "/datasets/dfcca6b4-9824-490a-9ecf-6cf170be8e89", + "page": "/datasets/795f71ac-cd6b-41ca-b908-60c8c17a6a43", "views": 0, "change": -1.0 }, { - "page": "/datasets/e1f143c2-4de6-4ff4-9ad9-96cc90f84c22", + "page": "/datasets/9ed48cba-b1e6-4a3e-bb63-81b17eb11b4e", "views": 0, "change": -1.0 }, { - "page": "/datasets/e534462d-800c-4811-a344-e91ac5550ff7", + "page": "/datasets/b13aee15-24f8-4ae9-9721-5799828c15bc", "views": 0, "change": -1.0 }, { - "page": "/datasets/e5aee011-bdb3-4caa-954c-a46678656270/export/download-manifest", + "page": "/datasets/b9ff5c04-4dd0-4764-b189-e9cfe49b3063/export/export-to-terra", "views": 0, "change": -1.0 }, { - "page": "/datasets/eb37d953-bde3-47cc-bbd2-f80491a0d4fd", + "page": "/datasets/bf2edd68-f1cf-4087-ae3e-e146b1f7e8e2", "views": 0, "change": -1.0 }, { - "page": "/datasets/eb37d953-bde3-47cc-bbd2-f80491a0d4fd/export", + "page": "/datasets/c2c9940c-681b-48d9-a538-12f20d4c5029", "views": 0, "change": -1.0 }, { - "page": "/datasets/eb37d953-bde3-47cc-bbd2-f80491a0d4fd/export/download-manifest", + "page": "/datasets/c7822863-e4e1-4f6f-ba9d-c4766436c4e5", "views": 0, "change": -1.0 }, { - "page": "/datasets/eb37d953-bde3-47cc-bbd2-f80491a0d4fd/export/export-to-terra", + "page": "/datasets/c7b30764-f52f-4e8e-ba33-085fe70b1c79", "views": 0, "change": -1.0 }, { - "page": "/datasets/edf3ded8-a4e5-43cf-9121-f1821315579a", + "page": "/datasets/d3e69d99-c9d5-455f-b4c3-5bec3ac96a4d", "views": 0, "change": -1.0 }, { - "page": "/datasets/ef0abd82-69d4-4b78-b9d8-72469be73232", + "page": "/datasets/d4079d07-421c-4233-afe3-f17c8f11503a/export", "views": 0, "change": -1.0 }, { - "page": "/datasets/f6c49bdc-7230-4ed4-8d4e-a46f9a8fbce2", + "page": "/datasets/d5817814-efad-4585-bec2-4d0c97709aa2", "views": 0, "change": -1.0 }, { - "page": "/datasets/fb72c298-c58e-4836-9653-a435d968ae2d", + "page": "/datasets/d7bf65de-79b5-47a1-889a-0c1a74075055", "views": 0, "change": -1.0 }, { - "page": "/datasets/fb72c298-c58e-4836-9653-a435d968ae2d/export", + "page": "/datasets/e5aee011-bdb3-4caa-954c-a46678656270/export/export-to-terra", "views": 0, "change": -1.0 }, { - "page": "/datasets/fb72c298-c58e-4836-9653-a435d968ae2d/export/download-manifest", + "page": "/datasets/f4d636ec-e0d2-4b4e-b63d-8c95e5aef9d6/export", "views": 0, "change": -1.0 }, { - "page": "/datasets/fdf85a48-027b-49fd-999c-41e01ceffac5", + "page": "/datasets/fe7091a5-0784-471a-8e12-84aa686215db/export/export-to-terra", "views": 0, "change": -1.0 }, { - "page": "/privacy", + "page": "/export/cavatica", "views": 0, "change": -1.0 } diff --git a/gh-pages/anvil-explorer/index.html b/gh-pages/anvil-explorer/index.html index d68cbd150..839269a28 100644 --- a/gh-pages/anvil-explorer/index.html +++ b/gh-pages/anvil-explorer/index.html @@ -579,7 +579,8 @@

Filter Selections

if (chartDataByKey[card.event_key] && chartDataByKey[card.event_key].length > 0) { const canvasId = `event-trend-chart-${chartIndex++}`; const parts = card.label.split('\n'); - const chartTitle = escapeHtml(rowLabel) + ' Over Time' + (parts[1] ? ` (${escapeHtml(parts[1].replace(/[()]/g, ''))})` : ''); + const cardLabel = parts[0]; + const chartTitle = escapeHtml(cardLabel) + ' Over Time' + (parts[1] ? ` (${escapeHtml(parts[1].replace(/[()]/g, ''))})` : ''); html += `
@@ -661,6 +662,7 @@

${chartTitle}

if (!detail) continue; const hasDatasetTitle = detail.some(r => r.dataset_title); + const hasClickUrl = detail.some(r => r.click_url); const isEmpty = detail.length === 0; let tableContent; @@ -671,9 +673,12 @@

${chartTitle}

const label = r.dataset_title || r.entity_name || r.page_path || '-'; const link = r.page_path ? `${siteBase}${r.page_path.replace(/\/export.*/, '')}` : null; const cell = link ? `${escapeHtml(label)}` : escapeHtml(label); - return `${cell}${formatNumber(r.count)}`; + const fileTd = hasClickUrl ? `${escapeHtml(r.file_label || fileNameFromUrl(r.click_url))}` : ''; + return `${cell}${fileTd}${formatNumber(r.count)}`; }).join(''); - tableContent = `${rows}
${escapeHtml(entityLabel)}Count
`; + const fileColLabel = event.detail_file_column || 'File'; + const fileHeader = hasClickUrl ? `${escapeHtml(fileColLabel)}` : ''; + tableContent = `${fileHeader}${rows}
${escapeHtml(entityLabel)}Count
`; } else { const rows = detail.map(r => { const raw = r.entity_name && r.entity_name !== '(not set)' ? r.entity_name : null; @@ -944,6 +949,12 @@

${escapeHtml(event.label)} } } + function fileNameFromUrl(url) { + if (!url) return '-'; + const parts = url.split('/'); + return parts[parts.length - 1] || url; + } + function formatChange(change) { if (change == null) return '-'; return (change >= 0 ? '+' : '') + (change * 100).toFixed(1) + '%'; diff --git a/gh-pages/hca-explorer/data/config.json b/gh-pages/hca-explorer/data/config.json index e23f5dbd8..157b24cd4 100644 --- a/gh-pages/hca-explorer/data/config.json +++ b/gh-pages/hca-explorer/data/config.json @@ -32,7 +32,7 @@ "event_key": "dataset_analyze_in_terra_requested" }, { - "label": "Export to Terra\n(Cross-Dataset)", + "label": "Export to Terra\n(Cross-Project)", "event_key": "index_analyze_in_terra_requested" }, { @@ -40,7 +40,7 @@ "event_key": "dataset_bulk_download_requested" }, { - "label": "curl Command\n(Cross-Dataset)", + "label": "curl Command\n(Cross-Project)", "event_key": "index_bulk_download_requested" }, { @@ -48,7 +48,7 @@ "event_key": "dataset_file_manifest_requested" }, { - "label": "File Manifest\n(Cross-Dataset)", + "label": "File Manifest\n(Cross-Project)", "event_key": "index_file_manifest_requested" } ] diff --git a/gh-pages/hca-explorer/data/custom_events.json b/gh-pages/hca-explorer/data/custom_events.json index f4c23227d..44babf932 100644 --- a/gh-pages/hca-explorer/data/custom_events.json +++ b/gh-pages/hca-explorer/data/custom_events.json @@ -2,50 +2,50 @@ { "event_name": "filter_selected", "label": "Filter Selections", - "current": 2958, - "prior": 3458, - "change": -0.14459224985540775 + "current": 2675, + "prior": 2958, + "change": -0.09567275185936444 }, { "event_name": "index_bulk_download_requested", "label": "Cohort curl Download Requests", - "current": 10, - "prior": 29, - "change": -0.6551724137931034 + "current": 41, + "prior": 10, + "change": 3.1 }, { "event_name": "index_file_manifest_requested", "label": "Cohort File Manifest Requests", - "current": 15, - "prior": 13, - "change": 0.15384615384615385 + "current": 7, + "prior": 15, + "change": -0.5333333333333333 }, { "event_name": "index_analyze_in_terra_requested", "label": "Cohort Analyze in Terra Requests", - "current": 0, - "prior": 34, - "change": -1.0 + "current": 2, + "prior": 0, + "change": null }, { "event_name": "dataset_analyze_in_terra_requested", "label": "Project Analyze in Terra Requests", - "current": 39, - "prior": 5, - "change": 6.8 + "current": 32, + "prior": 39, + "change": -0.1794871794871795 }, { "event_name": "dataset_bulk_download_requested", "label": "Project curl Download Requests", - "current": 431, - "prior": 438, - "change": -0.01598173515981735 + "current": 422, + "prior": 431, + "change": -0.02088167053364269 }, { "event_name": "dataset_file_manifest_requested", "label": "Project File Manifest Requests", - "current": 188, - "prior": 42, - "change": 3.4761904761904763 + "current": 218, + "prior": 188, + "change": 0.1595744680851064 } ] \ No newline at end of file diff --git a/gh-pages/hca-explorer/data/event_charts.json b/gh-pages/hca-explorer/data/event_charts.json index d4022b8e8..f96bdba02 100644 --- a/gh-pages/hca-explorer/data/event_charts.json +++ b/gh-pages/hca-explorer/data/event_charts.json @@ -15,11 +15,15 @@ { "month": "2026-04", "count": 39 + }, + { + "month": "2026-05", + "count": 32 } ] }, { - "label": "Cross-Dataset", + "label": "Cross-Project", "event_key": "index_analyze_in_terra_requested", "data": [ { @@ -29,6 +33,10 @@ { "month": "2026-04", "count": 0 + }, + { + "month": "2026-05", + "count": 2 } ] } @@ -48,11 +56,15 @@ { "month": "2026-04", "count": 431 + }, + { + "month": "2026-05", + "count": 422 } ] }, { - "label": "Cross-Dataset", + "label": "Cross-Project", "event_key": "index_bulk_download_requested", "data": [ { @@ -62,6 +74,10 @@ { "month": "2026-04", "count": 10 + }, + { + "month": "2026-05", + "count": 41 } ] } @@ -81,11 +97,15 @@ { "month": "2026-04", "count": 188 + }, + { + "month": "2026-05", + "count": 218 } ] }, { - "label": "Cross-Dataset", + "label": "Cross-Project", "event_key": "index_file_manifest_requested", "data": [ { @@ -95,6 +115,10 @@ { "month": "2026-04", "count": 15 + }, + { + "month": "2026-05", + "count": 7 } ] } diff --git a/gh-pages/hca-explorer/data/event_dataset_analyze_in_terra_requested_detail.json b/gh-pages/hca-explorer/data/event_dataset_analyze_in_terra_requested_detail.json index b59ee425d..25af7cbe5 100644 --- a/gh-pages/hca-explorer/data/event_dataset_analyze_in_terra_requested_detail.json +++ b/gh-pages/hca-explorer/data/event_dataset_analyze_in_terra_requested_detail.json @@ -1,117 +1,87 @@ [ { - "page_path": "/projects/f0f89c14-7460-4bab-9d42-22228a91f185/export-to-terra", + "page_path": "/projects/10201832-7c73-4033-9b65-3ef13d81656a/export-to-terra", "entity_name": "(not set)", "count": 3, - "dataset_title": "AIDA" + "dataset_title": "The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans" }, { - "page_path": "/projects/a4f154f8-5cc9-40b5-b8d7-af90afce8a8f/export-to-terra", + "page_path": "/projects/50db6ba4-3986-4d55-86b7-e1a5a888a17b/export-to-terra", "entity_name": "(not set)", "count": 2, - "dataset_title": "Human melanocyte development and melanoma dedifferentiation at single-cell resolution" + "dataset_title": "An integrated single-cell reference atlas of the human endometrium" }, { - "page_path": "/projects/d3ac7c1b-5302-4804-b611-dad9f89c049d/export-to-terra", + "page_path": "/projects/6c040a93-8cf8-4fd5-98de-2297eb07e9f6/export-to-terra", "entity_name": "(not set)", "count": 2, - "dataset_title": "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis." + "dataset_title": "Characterization of the transcriptional landscape of human developing hippocampus" }, { - "page_path": "/projects/e9f36305-d857-44a3-93f0-df4e6007dc97/export-to-terra", + "page_path": "/projects/85c0d6fa-f117-4d76-b01a-5d5e8f5f9188/export-to-terra", "entity_name": "(not set)", "count": 2, - "dataset_title": "Spatial multi-omic map of human myocardial infarction" + "dataset_title": "Single-nucleus profiling of human dilated and hypertrophic cardiomyopathy" }, { - "page_path": "/projects/923d3231-7295-4184-b3f6-c3082766a8c7/export-to-terra", + "page_path": "/projects/9d97f01f-9313-416e-9b07-560f048b2350/export-to-terra", "entity_name": "(not set)", "count": 2, - "dataset_title": "A Single-Cell Transcriptomic Atlas of Human Skin Aging." + "dataset_title": "Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral blood mononuclear cells from a patient with drug-induced hypersensitivity syndrome and healthy volunteers" }, { - "page_path": "/projects/cd61771b-661a-4e19-b269-6e5d95350de6/export-to-terra", + "page_path": "/projects/cc95ff89-2e68-4a08-a234-480eca21ce79/export-to-terra", "entity_name": "(not set)", - "count": 1, - "dataset_title": "Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis." - }, - { - "page_path": "/projects/9fc0064b-84ce-40a5-a768-e6eb3d364ee0/export-to-terra", - "entity_name": "(not set)", - "count": 1, - "dataset_title": "Single-cell RNA-seq reveals cell type-specific molecular and genetic associations to lupus" - }, - { - "page_path": "/projects/ad98d3cd-26fb-4ee3-99c9-8a2ab085e737/export-to-terra", - "entity_name": "(not set)", - "count": 1, - "dataset_title": "Cells of the adult human heart" - }, - { - "page_path": "/projects/aecfd908-674c-4d4e-b36e-0c1ceab02245/export-to-terra", - "entity_name": "(not set)", - "count": 1, - "dataset_title": "Spatial multiomics map of trophoblast development in early pregnancy" - }, - { - "page_path": "/projects/b176d756-62d8-4933-83a4-8b026380262f/export-to-terra", - "entity_name": "(not set)", - "count": 1, - "dataset_title": "A human embryonic limb cell atlas resolved in space and time" + "count": 2, + "dataset_title": "A single cell immune cell atlas of human hematopoietic system" }, { "page_path": "/projects/cfece4d2-f18d-44ad-a46a-42bbcb5cb3b7/export-to-terra", "entity_name": "(not set)", - "count": 1, + "count": 2, "dataset_title": "Single-Cell Transcriptome and Downstream Analyses of Human Stomach Reveal the Cell Diversity and Developmental Features of Gastric and Metaplastic Mucosae" }, { - "page_path": "/projects/ce7b12ba-664f-4f79-8fc7-3de6b1892183/export-to-terra", - "entity_name": "(not set)", - "count": 1, - "dataset_title": "Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis." - }, - { - "page_path": "/projects/8ab8726d-81b9-4bd2-acc2-4d50bee786b4/export-to-terra", + "page_path": "/projects/efea6426-510a-4b60-9a19-277e52bfa815/export-to-terra", "entity_name": "(not set)", - "count": 1, - "dataset_title": "An organoid and multi-organ developmental cell atlas reveals multilineage fate specification in the human intestine" + "count": 2, + "dataset_title": "Dissecting the protein and transcriptional responses of human immune cells to T cell and monocyte specific activation" }, { - "page_path": "/projects/daf9d982-7ce6-43f6-ab51-272577290606/export-to-terra", + "page_path": "/projects/f0f89c14-7460-4bab-9d42-22228a91f185/export-to-terra", "entity_name": "(not set)", - "count": 1, - "dataset_title": "Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis." + "count": 2, + "dataset_title": "AIDA" }, { - "page_path": "/projects/e255b1c6-1143-4fa6-83a8-528f15b41038/export-to-terra", + "page_path": "/projects/4bcc16b5-7a47-45bb-b9c0-be9d5336df2d/export-to-terra", "entity_name": "(not set)", - "count": 1, - "dataset_title": "A single-cell transcriptome atlas of human early embryogenesis" + "count": 2, + "dataset_title": "Single cell atlas of the human retina" }, { - "page_path": "/projects/f598aee0-d269-4036-90e9-d6d5b1c84429/export-to-terra", + "page_path": "/projects/7f980afc-4e01-4b9c-a9a1-f50e17fce8c2/export-to-terra", "entity_name": "(not set)", "count": 1, - "dataset_title": "Cellular atlas of the human ovary using morphologically guided spatial transcriptomics and single-cell sequencing" + "dataset_title": "A single\u2010cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast" }, { - "page_path": "/projects/f83165c5-e2ea-4d15-a5cf-33f3550bffde/export-to-terra", + "page_path": "/projects/b51f49b4-0d2e-4cbd-bbd5-04cd171fc2fa/export-to-terra", "entity_name": "(not set)", "count": 1, - "dataset_title": "Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics" + "dataset_title": "Single-cell RNA Sequencing of human microglia from post mortem Alzheimers Disease CNS tissue." }, { - "page_path": "/projects/925f9a4c-cac0-444a-ad2c-612656ab3a85/export-to-terra", + "page_path": "/projects/b10cd314-3e71-4437-9a16-77028d243e81/export-to-terra", "entity_name": "(not set)", "count": 1, - "dataset_title": "Spatially resolved multiomics of human cardiac niches" + "dataset_title": "The normal human lymph node cell classification and landscape defined by high-dimensional spatial proteomic" }, { - "page_path": "/projects/6f03e4ad-9305-4bfa-a5b6-929ffb1d94bd/export-to-terra", + "page_path": "/projects/896f377c-8e88-463e-82b0-b2a5409d6fe4/export-to-terra", "entity_name": "(not set)", "count": 1, - "dataset_title": "Spatially organized multicellular immune hubs in human colorectal cancer" + "dataset_title": "Single-cell atlas of healthy human blood unveils age-related loss of NKG2C+GZMB-CD8+ memory T cells and accumulation of type 2 memory T cells" }, { "page_path": "/projects/87f519b4-8862-41f9-acff-75e823e0e430/export-to-terra", @@ -120,76 +90,34 @@ "dataset_title": "Cardiac cell type-specific gene regulatory programs and disease risk association" }, { - "page_path": "/projects/85a9263b-0887-48ed-ab1a-ddfa773727b6/export-to-terra", + "page_path": "/projects/0777b9ef-91f3-468b-9dea-db477437aa1a/export-to-terra", "entity_name": "(not set)", "count": 1, - "dataset_title": "Spatial and single-cell transcriptional landscape of human cerebellar development" + "dataset_title": "Single-nucleus RNA-seq in the post-mortem brain in major depressive disorder." }, { - "page_path": 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"/projects/087efc3c-2601-4de6-bbe9-0114593050d1/export-to-terra", "entity_name": "(not set)", "count": 1, - "dataset_title": "Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19" + "dataset_title": "Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma" }, { "page_path": "/projects/f86f1ab4-1fbb-4510-ae35-3ffd752d4dfc/export-to-terra", diff --git a/gh-pages/hca-explorer/data/event_dataset_bulk_download_requested_detail.json b/gh-pages/hca-explorer/data/event_dataset_bulk_download_requested_detail.json index e489c31b8..8d3feaf89 100644 --- a/gh-pages/hca-explorer/data/event_dataset_bulk_download_requested_detail.json +++ b/gh-pages/hca-explorer/data/event_dataset_bulk_download_requested_detail.json @@ -1,159 +1,165 @@ [ { - "page_path": "/projects/cc95ff89-2e68-4a08-a234-480eca21ce79/get-curl-command", - "entity_name": "(not set)", - "count": 22, - "dataset_title": "A single cell immune cell atlas 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"dataset_title": "Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis." }, { - "page_path": "/projects/a80a63f2-e223-4890-81b0-415855b89abc/get-curl-command", + "page_path": "/projects/efea6426-510a-4b60-9a19-277e52bfa815/get-curl-command", "entity_name": "(not set)", - "count": 5, - "dataset_title": "Single cell RNA-seq of brain glioblastoma samples" + "count": 6, + "dataset_title": "Dissecting the protein and transcriptional responses of human immune cells to T cell and monocyte specific activation" }, { - "page_path": "/projects/f83165c5-e2ea-4d15-a5cf-33f3550bffde/get-curl-command", + "page_path": "/projects/64809a52-f703-4aec-b3a5-eca808a971d0/get-curl-command", "entity_name": "(not set)", "count": 5, - "dataset_title": "Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics" + "dataset_title": "Spatial transcriptomics of healthy and fibrotic human liver at single-cell resolution" }, { - "page_path": "/projects/c1810dbc-16d2-45c3-b45e-3e675f88d87b/get-curl-command", + "page_path": "/projects/c0518445-3b3b-49c6-b8fc-c41daa4eacba/get-curl-command", "entity_name": "(not set)", "count": 5, - "dataset_title": "A cell atlas of human thymic development defines T cell repertoire formation" + "dataset_title": "A cellular census of human lungs identifies novel cell states in health and in asthma" }, { - "page_path": "/projects/9fc0064b-84ce-40a5-a768-e6eb3d364ee0/get-curl-command", + "page_path": "/projects/c8e6c5d9-fcde-4845-bead-ff96999e3051/get-curl-command", "entity_name": "(not set)", "count": 5, - "dataset_title": "Single-cell RNA-seq reveals cell type-specific molecular and genetic associations to lupus" + "dataset_title": "Single-cell transcriptomic analyses provide insights into the developmental origins of neuroblastoma." }, { - "page_path": "/projects/53c53cd4-8127-4e12-bc7f-8fe1610a715c/get-curl-command", + "page_path": 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"entity_name": "(not set)", "count": 4, - "dataset_title": "Cross-tissue immune cell analysis reveals tissue-specific features in humans" + "dataset_title": "Single-nucleus RNA sequencing in ischemic cardiomyopathy reveals common transcriptional profile underlying end-stage heart failure." }, { - "page_path": "/projects/2b81ecc4-6ee0-438f-8c5b-c10b2464069e/get-curl-command", + "page_path": "/projects/c16a754f-5da3-46ed-8c1e-6426af2ef625/get-curl-command", "entity_name": "(not set)", "count": 4, - "dataset_title": "Single cell analysis of endometriosis reveals a coordinated transcriptional program driving immunotolerance and angiogenesis across eutopic and ectopic tissues" + "dataset_title": "Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis" }, { - "page_path": "/projects/457d0bfe-79e4-43f1-be5d-83bf080d809e/get-curl-command", + "page_path": "/projects/ad98d3cd-26fb-4ee3-99c9-8a2ab085e737/get-curl-command", "entity_name": "(not set)", "count": 4, - "dataset_title": "Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease" + "dataset_title": "Cells of the adult human heart" + }, + { + "page_path": "/projects/c5ca43aa-3b2b-4216-8eb3-f57adcbc99a1/get-curl-command", + "entity_name": "(not set)", + "count": 4, + "dataset_title": "Single-cell sequencing unveils distinct immune microenvironments with CCR6-CCL20 crosstalk in human chronic pancreatitis" }, { "page_path": "/projects/77780d56-03c0-481f-aade-2038490cef9f/get-curl-command", @@ -162,106 +168,106 @@ "dataset_title": "Retinal ganglion cell-specific genetic regulation in primary open angle glaucoma" }, { - "page_path": "/projects/85a9263b-0887-48ed-ab1a-ddfa773727b6/get-curl-command", + "page_path": "/projects/457d0bfe-79e4-43f1-be5d-83bf080d809e/get-curl-command", "entity_name": "(not set)", "count": 4, - "dataset_title": "Spatial and single-cell transcriptional landscape of human cerebellar development" + "dataset_title": "Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease" }, { - "page_path": "/projects/8f1f653d-3ea1-4d8e-b4a7-b97dc852c2b1/get-curl-command", + "page_path": "/projects/04e4292c-f62f-4098-ae9b-fd69ae002a90/get-curl-command", "entity_name": "(not set)", "count": 4, - "dataset_title": "Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer." + "dataset_title": "Cross-tissue immune cell analysis reveals tissue-specific features in humans" }, { - "page_path": "/projects/996120f9-e84f-409f-a01e-732ab58ca8b9/get-curl-command", + "page_path": "/projects/16241d82-3119-4bdd-bba5-5097c0591ba0/get-curl-command", "entity_name": "(not set)", "count": 4, - "dataset_title": "A human single cell atlas of the substantia nigra reveals novel cell specific pathways associated with the genetic risk of Parkinson\u2019s disease and neuropsychiatric disorders." + "dataset_title": "Organization of the human intestine at single-cell resolution" }, { - "page_path": "/projects/a9301beb-e9fa-42fe-b75c-84e8a460c733/get-curl-command", + "page_path": "/projects/4a95101c-9ffc-4f30-a809-f04518a23803/get-curl-command", "entity_name": "(not set)", "count": 4, - "dataset_title": "A human cell atlas of fetal gene expression." + "dataset_title": "Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease" }, { - "page_path": "/projects/cd61771b-661a-4e19-b269-6e5d95350de6/get-curl-command", + "page_path": "/projects/7f980afc-4e01-4b9c-a9a1-f50e17fce8c2/get-curl-command", "entity_name": "(not set)", - "count": 4, - "dataset_title": "Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis." + "count": 3, + "dataset_title": "A single\u2010cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast" }, { - "page_path": "/projects/cd9d6360-ce38-4321-97df-f13c79e3cb84/get-curl-command", + "page_path": "/projects/fed95462-3420-44fb-8b9d-2efbffb35479/get-curl-command", "entity_name": "(not set)", - "count": 4, - "dataset_title": "Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment" + "count": 3, + "dataset_title": "Extracellular matrix remodelling in dental pulp tissue of carious human teeth through the prism of single-cell RNA sequencing" }, { - "page_path": "/projects/cbd2911f-252b-4428-abde-69e270aefdfc/get-curl-command", + "page_path": "/projects/ef1e3497-515e-4bbe-8d4c-10161854b699/get-curl-command", "entity_name": "(not set)", "count": 3, - "dataset_title": "Comprehensive cell atlas of the first-trimester developing human brain" + "dataset_title": "A Single-Cell Atlas of the Human Healthy Airways" }, { - "page_path": "/projects/923d3231-7295-4184-b3f6-c3082766a8c7/get-curl-command", + "page_path": "/projects/ef1d9888-fa86-47a4-bb72-0ab0f20f7004/get-curl-command", "entity_name": "(not set)", "count": 3, - "dataset_title": "A Single-Cell Transcriptomic Atlas of Human Skin Aging." + "dataset_title": "Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia." }, { - "page_path": "/projects/b486e0d9-dd8e-462a-b662-9a5bbad5edae/get-curl-command", + "page_path": "/projects/e925633f-abd9-486a-81c6-1a6a66891d23/get-curl-command", "entity_name": "(not set)", "count": 3, - "dataset_title": "High-resolution single-cell transcriptomic survey of cardiomyocytes from patients with hypertrophic cardiomyopathy" + "dataset_title": "Spatially resolved human kidney multi-omics single cell atlas highlights the key role of the fibrotic microenvironment in kidney disease progression" }, { - "page_path": "/projects/51f02950-ee25-4f4b-8d07-59aa99bb3498/get-curl-command", + "page_path": "/projects/cdabcf0b-7602-4abf-9afb-3b410e545703/get-curl-command", "entity_name": "(not set)", "count": 3, - "dataset_title": "Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming" + "dataset_title": "A blood atlas of COVID-19 defines hallmarks of disease severity and specificity" }, { - "page_path": "/projects/e5fe8274-3769-4d7d-aa35-6d33c226ab43/get-curl-command", + "page_path": "/projects/9fc0064b-84ce-40a5-a768-e6eb3d364ee0/get-curl-command", "entity_name": "(not set)", "count": 3, - "dataset_title": "Human distal lung maps and lineage hierarchies reveal a bipotent progenitor" + "dataset_title": "Single-cell RNA-seq reveals cell type-specific molecular and genetic associations to lupus" }, { - "page_path": "/projects/f0f89c14-7460-4bab-9d42-22228a91f185/get-curl-command", + "page_path": "/projects/9d97f01f-9313-416e-9b07-560f048b2350/get-curl-command", "entity_name": "(not set)", "count": 3, - "dataset_title": "AIDA" + "dataset_title": "Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral blood mononuclear cells from a patient with drug-induced 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"dataset_title": "A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure" }, { - "page_path": "/projects/c7a342eb-777e-4479-95ce-468f5bbcd893/get-curl-command", + "page_path": "/projects/f7b46477-0f2a-4bff-a9b7-719e000499a3/get-curl-command", "entity_name": "(not set)", "count": 1, - "dataset_title": "A Single-Nucleus Atlas of Human Prenatal Inner Ear Development" + "dataset_title": "Dysregulated lung stroma drives emphysema exacerbation by potentiating resident lymphocytes to suppress an epithelial stem cell reservoir" + }, + { + "page_path": "/projects/ec6476ee-2949-41f3-947b-8eef41d6d3ac/get-curl-command", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19." }, { - "page_path": "/projects/c9e83418-a9f0-4ed1-ab4f-56d9513417bf/get-curl-command", + "page_path": 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"entity_name": "(not set)", "count": 1, - "dataset_title": "Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia." + "dataset_title": "Single-Cell Transcriptome and Downstream Analyses of Human Stomach Reveal the Cell Diversity and Developmental Features of Gastric and Metaplastic Mucosae" }, { - "page_path": "/projects/f29b124a-8597-4862-ae98-ff3a0fd9033e/get-curl-command", + "page_path": "/projects/cddab57b-6868-4be4-806f-395ed9dd635a/get-curl-command", "entity_name": "(not set)", "count": 1, - "dataset_title": "Spatially distinct reprogramming of the tumor microenvironment based on tumor invasion in diffuse-type gastric cancers" + "dataset_title": "Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns" }, { - "page_path": "/projects/f6133d2a-9f3d-4ef9-9c19-c23d6c7e6cc0/get-curl-command", + "page_path": 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"Spatial transcriptomic profiling of human retinoblastoma" + "dataset_title": "Direct exposure to SARS-CoV-2 and cigarette smoke increases infection severity and alters the stem cell-derived airway repair response" + }, + { + "page_path": "/projects/29b54165-34ee-4da5-b257-b4c1f7343656/get-curl-command", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker." + }, + { + "page_path": "/projects/28dd1438-8f40-40d0-8e53-ee3301b66218/get-curl-command", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "A transcriptional cross species map of pancreatic islet cells." + }, + { + "page_path": "/projects/27e2e0ae-5971-4927-aac1-19e81804097b/get-curl-command", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Pseudotime Ordering of Single Human \u03b2-Cells Reveals States of Insulin Production and Unfolded Protein Response." + }, + { + "page_path": 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interactions with the immune cells." }, { - "page_path": "/projects/577c946d-6de5-4b55-a854-cd3fde40bff2/get-curl-command", + "page_path": "/projects/6874b7eb-3445-47ec-8773-75141430e169/get-curl-command", "entity_name": "(not set)", "count": 1, - "dataset_title": "The single-cell transcriptomic landscape of early human diabetic nephropathy" + "dataset_title": "Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma" + }, + { + "page_path": "/projects/6735ff73-1a04-422e-b500-730202e46f8a/get-curl-command", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis" + }, + { + "page_path": "/projects/6663070f-fd8b-41a9-a479-2d1e07afa201/get-curl-command", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "A single-cell atlas of breast cancer cell lines to study tumour heterogeneity and drug response" + }, + { + "page_path": 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"dataset_title": "An integrated single cell and spatial transcriptomic map of human white adipose tissue" }, { - "page_path": "/projects/77dedd59-1376-4887-9bca-dc42b56d5b7a/get-curl-command", + "page_path": "/projects/3c27d2dd-b180-4b2b-bf05-e2e418393fd1/get-curl-command", "entity_name": "(not set)", "count": 1, - "dataset_title": "Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution" + "dataset_title": "Single-cell transcriptomics of normal pancreas, intraductal papillary mucinous neoplasm, and pancreatic adenosquamous carcinoma reveals the heterogeneous progression of pancreatic ductal and stromal cells" }, { - "page_path": "/projects/79351583-b212-44ba-b473-731bdcddb407/get-curl-command", + "page_path": "/projects/5116c081-8be7-49c5-8ce0-73b887328aa9/get-curl-command", "entity_name": "(not set)", "count": 1, - "dataset_title": "Single-cell dissection of the human brain vasculature" + "dataset_title": "A comprehensive single cell transcriptional landscape of human hematopoietic progenitors" }, { - "page_path": "/projects/7a8d45f1-353b-4508-8e89-65a96785b167/get-curl-command", + "page_path": "/projects/4d9d56e4-610d-4748-b57d-f8315e3f53a3/get-curl-command", "entity_name": "(not set)", "count": 1, - "dataset_title": "Generation of human islet cell type-specific identity genesets." + "dataset_title": "Refining Colorectal Cancer Classification and Clinical Stratification Through a Single-Cell Atlas" }, { - "page_path": "/projects/7c75f07c-608d-4c4a-a1b7-b13d11c0ad31/get-curl-command", + "page_path": "/projects/4c8e9d75-d85a-47de-9598-06549cf44b91/get-curl-command", "entity_name": "(not set)", "count": 1, - "dataset_title": "Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment." + "dataset_title": "Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions" }, { - "page_path": "/projects/fcaa53cd-ba57-4bfe-af9c-eaa958f95c1a/get-curl-command", + "page_path": "/projects/4bdaedeb-99ae-4fb4-be69-57497cf98b90/get-curl-command", "entity_name": "(not set)", "count": 1, - "dataset_title": "Mapping the developing human immune system across organs" + "dataset_title": "Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures" + }, + { + "page_path": "/projects/48f60534-ba4e-45bc-aa5b-6d3a6c45962e/get-curl-command", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Single nucleus transcriptome and chromatin accessibility of postmortem human pituitaries reveal diverse stem cell regulatory mechanisms" + }, + { + "page_path": "/projects/474a4229-840e-4d63-82af-8d3aa615ee17/get-curl-command", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Concerted changes in the pediatric single-cell intestinal ecosystem before and after anti-TNF blockade" + }, + { + "page_path": "/projects/415eb773-cadb-43d1-ab89-7d160d5cfc7d/get-curl-command", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Single-cell analysis reveals innate lymphoid cell lineage infidelity in atopic dermatitis" + }, + { + "page_path": "/projects/4037007b-0eff-4e6d-b7bd-8dd8eec80143/get-curl-command", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Single Cell RNA-Sequencing of Human Limb Skeletal Muscle across Development and Myogenic Culture from Pluripotent Stem Cells" + }, + { + "page_path": "/projects/3d49e5e5-976f-44cb-b6b9-079016c31c56/get-curl-command", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Multimodal single cell sequencing of human diabetic kidney disease implicates chromatin accessibility and genetic background in disease progression" + }, + { + "page_path": "/projects/fde199d2-a841-4ed1-aa65-b9e0af8969b1/get-curl-command", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Cells of the human intestinal tract mapped across space and time" } ] \ No newline at end of file diff --git a/gh-pages/hca-explorer/data/event_dataset_file_manifest_requested_detail.json b/gh-pages/hca-explorer/data/event_dataset_file_manifest_requested_detail.json index 7f9151c36..29b5bb0e6 100644 --- a/gh-pages/hca-explorer/data/event_dataset_file_manifest_requested_detail.json +++ b/gh-pages/hca-explorer/data/event_dataset_file_manifest_requested_detail.json @@ -1,33 +1,33 @@ [ { - "page_path": "/projects/9fc0064b-84ce-40a5-a768-e6eb3d364ee0/project-metadata", + "page_path": "/projects/cc95ff89-2e68-4a08-a234-480eca21ce79/project-metadata", "entity_name": "(not set)", "count": 11, - "dataset_title": "Single-cell RNA-seq reveals cell type-specific molecular and genetic associations to lupus" + "dataset_title": "A single cell immune cell atlas of human hematopoietic system" }, { "page_path": "/projects/f0f89c14-7460-4bab-9d42-22228a91f185/project-metadata", "entity_name": "(not set)", - "count": 7, + "count": 10, "dataset_title": "AIDA" }, { - "page_path": "/projects/cc95ff89-2e68-4a08-a234-480eca21ce79/project-metadata", + "page_path": "/projects/2d559a6e-7cd9-432f-9f6e-0e4df03b0888/project-metadata", "entity_name": "(not set)", - "count": 7, - "dataset_title": "A single cell immune cell atlas of human hematopoietic system" + "count": 10, + "dataset_title": "The immune cell landscape in kidneys of patients with lupus nephritis." }, { - "page_path": "/projects/c1810dbc-16d2-45c3-b45e-3e675f88d87b/project-metadata", + "page_path": "/projects/10201832-7c73-4033-9b65-3ef13d81656a/project-metadata", "entity_name": "(not set)", - "count": 6, - "dataset_title": "A cell atlas of human thymic development defines T cell repertoire formation" + "count": 8, + "dataset_title": "The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans" }, { - "page_path": "/projects/455b46e6-d8ea-4611-861e-de720a562ada/project-metadata", + "page_path": "/projects/e9f36305-d857-44a3-93f0-df4e6007dc97/project-metadata", "entity_name": "(not set)", - "count": 5, - "dataset_title": "Transcriptomic characterisation of haematopoietic stem and progenitor cells from human adult bone marrow, spleen and peripheral blood" + "count": 6, + "dataset_title": "Spatial multi-omic map of human myocardial infarction" }, { "page_path": "/projects/896f377c-8e88-463e-82b0-b2a5409d6fe4/project-metadata", @@ -36,100 +36,94 @@ "dataset_title": "Single-cell atlas of healthy human blood unveils age-related loss of NKG2C+GZMB-CD8+ memory T cells and accumulation of type 2 memory T cells" }, { - "page_path": "/projects/cfece4d2-f18d-44ad-a46a-42bbcb5cb3b7/project-metadata", + "page_path": "/projects/9fc0064b-84ce-40a5-a768-e6eb3d364ee0/project-metadata", "entity_name": "(not set)", "count": 5, - "dataset_title": "Single-Cell Transcriptome and Downstream Analyses of Human Stomach Reveal the Cell Diversity and Developmental Features of Gastric and Metaplastic Mucosae" - }, - { - "page_path": 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"dataset_title": "A blood atlas of COVID-19 defines hallmarks of disease severity and specificity" + "dataset_title": "Single-Nucleus and In Situ RNA\u2013Sequencing Reveal Cell Topographies in the Human Pancreas" }, { - "page_path": "/projects/f2078d5f-2e7d-4844-8552-f7c41a231e52/project-metadata", + "page_path": "/projects/e5ef5c5f-b856-47d1-b643-62c265528060/project-metadata", "entity_name": "(not set)", "count": 4, - "dataset_title": "Single-cell eQTL mapping identifies cell type-specific genetic control of autoimmune disease" + "dataset_title": "B cell signatures and tertiary lymphoid structures contribute to outcome in head and neck squamous cell carcinoma" }, { - "page_path": "/projects/abe1a013-af7a-45ed-8c26-f3793c24a1f4/project-metadata", + "page_path": "/projects/8a666b76-daaf-4b1f-9414-e4807a1d1e8b/project-metadata", "entity_name": "(not set)", "count": 3, - "dataset_title": "Spatio-temporal immune zonation of the human kidney" + "dataset_title": "Single Cell, Single Nucleus and Spatial RNA Sequencing of the Human Liver Identifies Hepatic Stellate Cell and Cholangiocyte Heterogeneity" }, { - "page_path": "/projects/febdaddd-ad3c-4f4a-820f-ade15c48545a/project-metadata", + "page_path": "/projects/8f1f653d-3ea1-4d8e-b4a7-b97dc852c2b1/project-metadata", "entity_name": "(not set)", "count": 3, - "dataset_title": "A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures" + "dataset_title": "Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer." }, { - "page_path": "/projects/ad98d3cd-26fb-4ee3-99c9-8a2ab085e737/project-metadata", + "page_path": "/projects/85c0d6fa-f117-4d76-b01a-5d5e8f5f9188/project-metadata", "entity_name": "(not set)", "count": 3, - "dataset_title": "Cells of the adult human heart" + "dataset_title": "Single-nucleus profiling of human dilated and hypertrophic cardiomyopathy" }, { - "page_path": "/projects/957261f7-2bd6-4358-a6ed-24ee080d5cfc/project-metadata", + "page_path": "/projects/21ea8ddb-525f-4f1f-a820-31f0360399a2/project-metadata", "entity_name": "(not set)", "count": 3, - "dataset_title": "A spatially resolved atlas of the human lung characterizes a gland-associated immune niche" + "dataset_title": "Cellular heterogeneity of human fallopian tubes in normal and hydrosalpinx disease states identified by scRNA-seq" }, { - "page_path": "/projects/5f607e50-ba22-4598-b1e9-f3d9d7a35dcc/project-metadata", + "page_path": "/projects/90588227-d8c1-47ee-a397-0d0b1d79aea9/project-metadata", "entity_name": "(not set)", - "count": 3, - "dataset_title": "COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas." + "count": 2, + "dataset_title": "Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19" }, { - "page_path": "/projects/0cc58d0b-1734-4e1d-9113-b32e52f75e36/project-metadata", + "page_path": 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landscape of cervical cancer heterogeneity" }, { - "page_path": "/projects/e9f36305-d857-44a3-93f0-df4e6007dc97/project-metadata", + "page_path": "/projects/cddab57b-6868-4be4-806f-395ed9dd635a/project-metadata", "entity_name": "(not set)", "count": 2, - "dataset_title": "Spatial multi-omic map of human myocardial infarction" + "dataset_title": "Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns" }, { - "page_path": "/projects/e0009214-c0a0-4a7b-96e2-d6a83e966ce0/project-metadata", + "page_path": "/projects/cdabcf0b-7602-4abf-9afb-3b410e545703/project-metadata", "entity_name": "(not set)", "count": 2, - "dataset_title": "Tabula Muris: Transcriptomic characterization of 20 organs and tissues from Mus musculus at single cell resolution" + "dataset_title": "A blood atlas of COVID-19 defines hallmarks of disease severity and specificity" }, { - "page_path": "/projects/da74b507-60ee-4dd1-bd02-807bb051a337/project-metadata", + "page_path": "/projects/cd9d6360-ce38-4321-97df-f13c79e3cb84/project-metadata", "entity_name": "(not set)", "count": 2, - "dataset_title": "Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin" + "dataset_title": "Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment" }, { "page_path": "/projects/c8e6c5d9-fcde-4845-bead-ff96999e3051/project-metadata", @@ -138,100 +132,130 @@ "dataset_title": "Single-cell transcriptomic analyses provide insights into the developmental origins of neuroblastoma." }, { - "page_path": "/projects/c893cb57-5c9f-4f26-9312-21b85be84313/project-metadata", + "page_path": "/projects/c5ca43aa-3b2b-4216-8eb3-f57adcbc99a1/project-metadata", "entity_name": "(not set)", "count": 2, - "dataset_title": "Colonic single epithelial cell census reveals goblet cell drivers of barrier breakdown in inflammatory bowel disease." + "dataset_title": "Single-cell sequencing unveils distinct immune microenvironments with CCR6-CCL20 crosstalk in human chronic pancreatitis" }, { - "page_path": "/projects/c0518445-3b3b-49c6-b8fc-c41daa4eacba/project-metadata", + "page_path": "/projects/b963bd4b-4bc1-4404-8425-69d74bc636b8/project-metadata", "entity_name": "(not set)", "count": 2, - "dataset_title": "A cellular census of human lungs identifies novel cell states in health and in asthma" + "dataset_title": "Single-cell multi-omics analysis of the immune response in COVID-19" }, { - "page_path": "/projects/b176d756-62d8-4933-83a4-8b026380262f/project-metadata", + "page_path": "/projects/a4f154f8-5cc9-40b5-b8d7-af90afce8a8f/project-metadata", "entity_name": "(not set)", "count": 2, - "dataset_title": "A human embryonic limb cell atlas resolved in space and time" + "dataset_title": "Human melanocyte development and melanoma dedifferentiation at single-cell resolution" }, { - "page_path": "/projects/923d3231-7295-4184-b3f6-c3082766a8c7/project-metadata", + "page_path": 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"(not set)", "count": 2, - "dataset_title": "Molecular characterization of selectively vulnerable neurons in Alzheimer's disease." + "dataset_title": "Cells of the human intestinal tract mapped across space and time" }, { - "page_path": "/projects/4bcc16b5-7a47-45bb-b9c0-be9d5336df2d/project-metadata", + "page_path": "/projects/7f980afc-4e01-4b9c-a9a1-f50e17fce8c2/project-metadata", "entity_name": "(not set)", "count": 2, - "dataset_title": "Single cell atlas of the human retina" + "dataset_title": "A single\u2010cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast" }, { - "page_path": "/projects/6c040a93-8cf8-4fd5-98de-2297eb07e9f6/project-metadata", + "page_path": "/projects/1c6a960d-52ac-44ea-b728-a59c7ab9dc8e/project-metadata", "entity_name": "(not set)", "count": 2, - "dataset_title": "Characterization of the transcriptional landscape of human developing hippocampus" + "dataset_title": "Single-Cell Heterogeneity Analysis and CRISPR Screen Identify Key \u03b2-Cell-Specific Disease Genes" }, { - "page_path": "/projects/16cd6791-2adb-4d0f-8222-0184dada6456/project-metadata", + "page_path": "/projects/5f607e50-ba22-4598-b1e9-f3d9d7a35dcc/project-metadata", "entity_name": "(not set)", "count": 2, - "dataset_title": "Single-Cell Transcriptomics of Human Substantia Nigra in Parkinson's Disease" + "dataset_title": "COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas." }, { - "page_path": "/projects/376a7f55-b876-4f60-9cf3-ed7bc83d5415/project-metadata", + "page_path": "/projects/03c6fce7-789e-4e78-a27a-664d562bb738/project-metadata", "entity_name": "(not set)", "count": 2, - "dataset_title": "Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs" + "dataset_title": "Transcriptomes of 1,529 individual cells from 88 human preimplantation embryos" }, { - "page_path": "/projects/10201832-7c73-4033-9b65-3ef13d81656a/project-metadata", + "page_path": 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"dataset_title": "Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming" + "dataset_title": "Spatial transcriptomic profiling of human retinoblastoma" }, { - "page_path": "/projects/577c946d-6de5-4b55-a854-cd3fde40bff2/project-metadata", + "page_path": "/projects/087efc3c-2601-4de6-bbe9-0114593050d1/project-metadata", "entity_name": "(not set)", "count": 2, - "dataset_title": "The single-cell transcriptomic landscape of early human diabetic nephropathy" + "dataset_title": "Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma" }, { - "page_path": "/projects/6179c38c-9987-4e7c-a4bb-d34cf33a3c3f/project-metadata", + "page_path": "/projects/1fac187b-1c3f-41c4-b6b6-6a9a8c0489d1/project-metadata", "entity_name": "(not set)", "count": 2, - "dataset_title": "Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age" + "dataset_title": "Construction of A Human Cell Landscape by Single-cell mRNA-seq" }, { - "page_path": "/projects/b208466a-6fb0-4385-8cfb-8e03ff6b939e/project-metadata", + "page_path": "/projects/2ad191cd-bd7a-409b-9bd1-e72b5e4cce81/project-metadata", + "entity_name": "(not set)", + "count": 2, + "dataset_title": "Co-evolution of tumor and immune cells during progression of multiple myeloma." + }, + { + "page_path": "/projects/455b46e6-d8ea-4611-861e-de720a562ada/project-metadata", + "entity_name": "(not set)", + "count": 2, + "dataset_title": "Transcriptomic characterisation of haematopoietic stem and progenitor cells from human adult bone marrow, spleen and peripheral blood" + }, + { + "page_path": "/projects/4627f43e-a43f-44dd-8c4b-7efddb3f296d/project-metadata", + "entity_name": "(not set)", + "count": 2, + "dataset_title": "Single cell RNA sequencing to dissect the molecular heterogeneity in lupus nephritis" + }, + { + "page_path": "/projects/50db6ba4-3986-4d55-86b7-e1a5a888a17b/project-metadata", + "entity_name": "(not set)", + "count": 2, + "dataset_title": "An integrated single-cell reference atlas of the human endometrium" + }, + { + "page_path": "/projects/566d00b0-e1f8-4b92-9cbd-57de9fad0050/project-metadata", + "entity_name": "(not set)", + "count": 2, + "dataset_title": "Single-cell analyses of Crohn's disease tissues reveal intestinal intraepithelial T cells heterogeneity and altered subset distributions" + }, + { + "page_path": "/projects/ae62bb31-55ca-4127-b0fb-b1771a604645/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Single-cell analysis of human non-small cell lung cancer lesions refines tumor classification and patient stratification" + "dataset_title": "Time-resolved systems immunology reveals a late juncture linked to fatal COVID-19." }, { "page_path": "/projects/c16a754f-5da3-46ed-8c1e-6426af2ef625/project-metadata", @@ -240,10 +264,10 @@ "dataset_title": "Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis" }, { - "page_path": "/projects/bba2f908-e0cb-4ee7-b007-f9c650e08be0/project-metadata", + "page_path": "/projects/bcdf233f-9246-4c0c-9843-0514120b7e3a/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Mapping human haematopoietic stem cells from haemogenic endothelium to birth." + "dataset_title": "Multimodal mapping of the tumor and peripheral blood immune landscape in human pancreatic cancer" }, { "page_path": "/projects/b51f49b4-0d2e-4cbd-bbd5-04cd171fc2fa/project-metadata", @@ -252,16 +276,16 @@ "dataset_title": "Single-cell RNA Sequencing of human microglia from post mortem Alzheimers Disease CNS tissue." }, { - "page_path": "/projects/b486e0d9-dd8e-462a-b662-9a5bbad5edae/project-metadata", + "page_path": "/projects/b208466a-6fb0-4385-8cfb-8e03ff6b939e/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "High-resolution single-cell transcriptomic survey of cardiomyocytes from patients with hypertrophic cardiomyopathy" + "dataset_title": "Single-cell analysis of human non-small cell lung cancer lesions refines tumor classification and patient stratification" }, { - "page_path": "/projects/b3938158-4e8d-4fdb-9e13-9e94270dde16/project-metadata", + "page_path": "/projects/b176d756-62d8-4933-83a4-8b026380262f/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Single-Nucleus and In Situ RNA\u2013Sequencing Reveal Cell Topographies in the Human Pancreas" + "dataset_title": "A human embryonic limb cell atlas resolved in space and time" }, { "page_path": "/projects/aecfd908-674c-4d4e-b36e-0c1ceab02245/project-metadata", @@ -270,22 +294,28 @@ "dataset_title": "Spatial multiomics map of trophoblast development in early pregnancy" }, { - "page_path": "/projects/b10cd314-3e71-4437-9a16-77028d243e81/project-metadata", + "page_path": "/projects/ae71be1d-ddd8-4feb-9bed-24c3ddb6e1ad/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "The normal human lymph node cell classification and landscape defined by high-dimensional spatial proteomic" + "dataset_title": "Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes" }, { - "page_path": "/projects/94023a08-611d-4f22-a8c9-90956e091b2e/project-metadata", + "page_path": "/projects/923d3231-7295-4184-b3f6-c3082766a8c7/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Healthy human kidney cell type single cell RNA-seq data" + "dataset_title": "A Single-Cell Transcriptomic Atlas of Human Skin Aging." }, { - "page_path": "/projects/ae71be1d-ddd8-4feb-9bed-24c3ddb6e1ad/project-metadata", + "page_path": "/projects/ad98d3cd-26fb-4ee3-99c9-8a2ab085e737/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes" + "dataset_title": "Cells of the adult human heart" + }, + { + "page_path": "/projects/a9f5323a-ce71-471c-9caf-04cc118fd1d7/project-metadata", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Decoding Human Megakaryocyte Development" }, { "page_path": "/projects/a80a63f2-e223-4890-81b0-415855b89abc/project-metadata", @@ -294,34 +324,52 @@ "dataset_title": "Single cell RNA-seq of brain glioblastoma samples" }, { - "page_path": "/projects/c281ab63-7b7d-4bdf-b761-9b1baaa18f82/project-metadata", + "page_path": "/projects/99101928-d9b1-4aaf-b759-e97958ac7403/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Single-Cell Atlas of Lineage States, Tumor Microenvironment, and Subtype-Specific Expression Programs in Gastric Cancer" + "dataset_title": "Single-Cell Transcriptomics of the Human Endocrine Pancreas" }, { - "page_path": "/projects/a004b150-1c36-4af6-9bbd-070c06dbc17d/project-metadata", + "page_path": "/projects/94023a08-611d-4f22-a8c9-90956e091b2e/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "A single-cell atlas of the healthy breast tissues reveals clinically relevant clusters of breast epithelial cells" + "dataset_title": "Healthy human kidney cell type single cell RNA-seq data" }, { - "page_path": "/projects/9833669b-d694-4b93-a3d0-6b6f9dbcfc10/project-metadata", + "page_path": "/projects/92892ab2-1334-4b1c-9761-14f5a73548ea/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Ureter single-cell and spatial mapping reveal cell types, architecture, and signaling networks" + "dataset_title": "Discriminating mild from critical COVID-19 by innate and adaptive immune single-cell profiling of bronchoalveolar lavages" }, { - "page_path": "/projects/a4f154f8-5cc9-40b5-b8d7-af90afce8a8f/project-metadata", + "page_path": "/projects/8b954fb2-bccb-44c5-84e3-9f91e9189c40/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Human melanocyte development and melanoma dedifferentiation at single-cell resolution" + "dataset_title": "Dynamic changes in human single cell transcriptional signatures during fatal sepsis" }, { - "page_path": "/projects/c5f46615-68de-4cf4-bbc2-a0ae10f08243/project-metadata", + "page_path": "/projects/894ae6ac-5b48-41a8-a72f-315a9b60a62e/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Developmental cell programs are co-opted in inflammatory skin disease." + "dataset_title": "A Single-Cell Transcriptome Atlas of the Human Pancreas." + }, + { + "page_path": "/projects/87f519b4-8862-41f9-acff-75e823e0e430/project-metadata", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Cardiac cell type-specific gene regulatory programs and disease risk association" + }, + { + "page_path": "/projects/c281ab63-7b7d-4bdf-b761-9b1baaa18f82/project-metadata", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Single-Cell Atlas of Lineage States, Tumor Microenvironment, and Subtype-Specific Expression Programs in Gastric Cancer" + }, + { + "page_path": "/projects/cfece4d2-f18d-44ad-a46a-42bbcb5cb3b7/project-metadata", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Single-Cell Transcriptome and Downstream Analyses of Human Stomach Reveal the Cell Diversity and Developmental Features of Gastric and Metaplastic Mucosae" }, { "page_path": "/projects/c4077b3c-5c98-4d26-a614-246d12c2e5d7/project-metadata", @@ -330,46 +378,52 @@ "dataset_title": "scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation" }, { - "page_path": "/projects/c41dffbf-ad83-447c-a0e1-13e689d9b258/project-metadata", + "page_path": "/projects/e49e556a-da5a-442a-b45c-8691b457623e/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Resolving the fibrotic niche of human liver cirrhosis using single-cell transcriptomics" + "dataset_title": "Multi-scale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma" }, { - "page_path": "/projects/c5ca43aa-3b2b-4216-8eb3-f57adcbc99a1/project-metadata", + "page_path": "/projects/7fc0a756-9b06-4e63-a780-6c9fc3f9d76d/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Single-cell sequencing unveils distinct immune microenvironments with CCR6-CCL20 crosstalk in human chronic pancreatitis" + "dataset_title": "Mapping hormone-regulated cell-cell interaction networks in the human breast at single-cell resolution" }, { - "page_path": "/projects/c7a342eb-777e-4479-95ce-468f5bbcd893/project-metadata", + "page_path": "/projects/febdaddd-ad3c-4f4a-820f-ade15c48545a/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "A Single-Nucleus Atlas of Human Prenatal Inner Ear Development" + "dataset_title": "A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures" }, { - "page_path": "/projects/cd61771b-661a-4e19-b269-6e5d95350de6/project-metadata", + "page_path": 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"(not set)", "count": 1, - "dataset_title": "Human subcutaneous and visceral adipocyte atlases uncover classical and non-classical adipocytes and depot-specific patterns" + "dataset_title": "Dissecting the protein and transcriptional responses of human immune cells to T cell and monocyte specific activation" }, { - "page_path": "/projects/e4b18cd2-8f15-490d-b9f1-d118aa067dc3/project-metadata", + "page_path": "/projects/ec6476ee-2949-41f3-947b-8eef41d6d3ac/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Single cell RNA-seq analysis of adult and paediatric IDH-wildtype Glioblastomas" + "dataset_title": "Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19." + }, + { + "page_path": "/projects/e925633f-abd9-486a-81c6-1a6a66891d23/project-metadata", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Spatially resolved human kidney multi-omics single cell atlas 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"entity_name": "(not set)", "count": 1, - "dataset_title": "Single-cell Transcriptome Atlas of Testis Aging" + "dataset_title": "Resolving the fibrotic niche of human liver cirrhosis using single-cell transcriptomics" }, { - "page_path": "/projects/e993adcd-d4ba-4f88-9a05-d1c05bdf0c45/project-metadata", + "page_path": "/projects/e0009214-c0a0-4a7b-96e2-d6a83e966ce0/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Single-cell RNA-seq of bone marrow cells from aplastic anemia patient and healthy donor" + "dataset_title": "Tabula Muris: Transcriptomic characterization of 20 organs and tissues from Mus musculus at single cell resolution" }, { - "page_path": "/projects/f86f1ab4-1fbb-4510-ae35-3ffd752d4dfc/project-metadata", + "page_path": "/projects/dcc28fb3-7bab-48ce-bc4b-684c00e133ce/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell 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cell phenotypes" }, { - "page_path": "/projects/2ad191cd-bd7a-409b-9bd1-e72b5e4cce81/project-metadata", + "page_path": "/projects/1defdada-a365-44ad-9b29-443b06bd11d6/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Co-evolution of tumor and immune cells during progression of multiple myeloma." + "dataset_title": "A single-cell molecular map of mouse gastrulation and early organogenesis" }, { - "page_path": "/projects/2caedc30-c816-4b99-a237-b9f3b458c8e5/project-metadata", + "page_path": "/projects/1cd1f41f-f81a-486b-a05b-66ec60f81dcf/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Single-Cell Transcriptomics Reveal Immune Mechanisms of the Onset and Progression of IgA Nephropathy" + "dataset_title": "A single-cell survey of the human first-trimester placenta and decidua" }, { - "page_path": "/projects/30dc3964-1135-4b56-b393-ce2dcbc6e379/project-metadata", + "page_path": 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"dataset_title": "Early lymph node T follicular helper cell signalling hub drives influenza vaccine response in an ancestrally diverse cohort" + "dataset_title": "Generation of human islet cell type-specific identity genesets." + }, + { + "page_path": "/projects/79351583-b212-44ba-b473-731bdcddb407/project-metadata", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Single-cell dissection of the human brain vasculature" + }, + { + "page_path": "/projects/769a08d1-b8a4-4f1e-95f7-6071a9827555/project-metadata", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Hypertension delays viral clearance and exacerbates airway hyperinflammation in patients with COVID-19" + }, + { + "page_path": "/projects/73769e0a-5fcd-41f4-9083-41ae08bfa4c1/project-metadata", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "A proximal-to-distal survey of healthy adult\u00a0human\u00a0small intestine and colon epithelium by single-cell transcriptomics" }, { "page_path": 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"/projects/f0f89c14-7460-4bab-9d42-22228a91f185 \u5f15\u7528", "views": 0, "change": -1.0 }, { - "page": "/projects/f6133d2a-9f3d-4ef9-9c19-c23d6c7e6cc0/export-to-terra", + "page": "/projects/f0f89c14-7460-4bab-9d42-22228a91f185 cite", "views": 0, "change": -1.0 }, { - "page": "/projects/f7b46477-0f2a-4bff-a9b7-719e000499a3/project-matrices", + "page": "/projects/f29b124a-8597-4862-ae98-ff3a0fd9033e/export-to-terra", "views": 0, "change": -1.0 }, { - "page": "/projects/f7b46477-0f2a-4bff-a9b7-719e000499a3/project-metadata", + "page": "/projects/f29b124a-8597-4862-ae98-ff3a0fd9033e/get-curl-command", "views": 0, "change": -1.0 }, { - "page": "/projects/f81efc03-9f56-4354-aabb-6ce819c3d414/export-to-terra", + "page": "/projects/f29b124a-8597-4862-ae98-ff3a0fd9033e/project-matrices", "views": 0, "change": -1.0 }, { - "page": "/projects/f81efc03-9f56-4354-aabb-6ce819c3d414/get-curl-command", + "page": "/projects/f29b124a-8597-4862-ae98-ff3a0fd9033e/project-metadata", "views": 0, "change": -1.0 }, { - "page": "/projects/f81efc03-9f56-4354-aabb-6ce819c3d414/project-matrices", + "page": "/projects/f3825dfe-990a-431f-b971-9c26d39840db/export-to-terra", "views": 0, "change": -1.0 }, { - "page": "/projects/f81efc03-9f56-4354-aabb-6ce819c3d414/project-metadata", + "page": "/projects/f3825dfe-990a-431f-b971-9c26d39840db/get-curl-command", "views": 0, "change": -1.0 }, { - "page": "/projects/f8aa201c-4ff1-45a4-890e-840d63459ca2/export-to-terra", + "page": "/projects/f3825dfe-990a-431f-b971-9c26d39840db/project-matrices", "views": 0, "change": -1.0 }, { - "page": "/projects/f8aa201c-4ff1-45a4-890e-840d63459ca2/get-curl-command", + "page": "/projects/f4d011ce-d1f5-48a4-ab61-ae14176e3a6e/get-curl-command", "views": 0, "change": -1.0 }, { - "page": "/projects/f8aa201c-4ff1-45a4-890e-840d63459ca2/project-matrices", + "page": "/projects/f77290ae-0d7b-4239-b0fe-3cf2c9e8858d/export-to-terra", "views": 0, "change": -1.0 }, { - "page": "/projects/f8aa201c-4ff1-45a4-890e-840d63459ca2/project-metadata", + "page": "/projects/f83165c5-e2ea-4d15-a5cf-33f3550bffde/expression-matrices", "views": 0, "change": -1.0 }, { - "page": "/projects/fae72d89-4ac4-4aab-9b93-574775e168d4/project-matrices", + "page": "/projects/fa3f460f-4fb9-4ced-b548-8ba6a8ecae3f)", "views": 0, "change": -1.0 }, { - "page": "/projects/faeedcb0-e046-4be7-b1ad-80a3eeabb066/export-to-terra", + "page": "/projects/fa3f460f-4fb9-4ced-b548-8ba6a8ecae3f/export-to-terra", "views": 0, "change": -1.0 }, { - "page": "/projects/faeedcb0-e046-4be7-b1ad-80a3eeabb066/project-metadata", + "page": "/projects/fde199d2-a841-4ed1-aa65-b9e0af8969b1)", "views": 0, "change": -1.0 }, { - "page": "/projects/fde199d2-a841-4ed1-aa65-b9e0af8969b1/export-to-terra", + "page": "/projects/febdaddd-ad3c-4f4a-820f-ade15c48545a/export-to-terra", "views": 0, "change": -1.0 }, { - "page": "/projects/fde199d2-a841-4ed1-aa65-b9e0af8969b1/project-matrices", + "page": "/projects/lung", "views": 0, "change": -1.0 } diff --git a/gh-pages/hca-explorer/index.html b/gh-pages/hca-explorer/index.html index d68cbd150..839269a28 100644 --- a/gh-pages/hca-explorer/index.html +++ b/gh-pages/hca-explorer/index.html @@ -579,7 +579,8 @@

Filter Selections

if (chartDataByKey[card.event_key] && chartDataByKey[card.event_key].length > 0) { const canvasId = `event-trend-chart-${chartIndex++}`; const parts = card.label.split('\n'); - const chartTitle = escapeHtml(rowLabel) + ' Over Time' + (parts[1] ? ` (${escapeHtml(parts[1].replace(/[()]/g, ''))})` : ''); + const cardLabel = parts[0]; + const chartTitle = escapeHtml(cardLabel) + ' Over Time' + (parts[1] ? ` (${escapeHtml(parts[1].replace(/[()]/g, ''))})` : ''); html += `
@@ -661,6 +662,7 @@

${chartTitle}

if (!detail) continue; const hasDatasetTitle = detail.some(r => r.dataset_title); + const hasClickUrl = detail.some(r => r.click_url); const isEmpty = detail.length === 0; let tableContent; @@ -671,9 +673,12 @@

${chartTitle}

const label = r.dataset_title || r.entity_name || r.page_path || '-'; const link = r.page_path ? `${siteBase}${r.page_path.replace(/\/export.*/, '')}` : null; const cell = link ? `${escapeHtml(label)}` : escapeHtml(label); - return `${cell}${formatNumber(r.count)}`; + const fileTd = hasClickUrl ? `${escapeHtml(r.file_label || fileNameFromUrl(r.click_url))}` : ''; + return `${cell}${fileTd}${formatNumber(r.count)}`; }).join(''); - tableContent = `${rows}
${escapeHtml(entityLabel)}Count
`; + const fileColLabel = event.detail_file_column || 'File'; + const fileHeader = hasClickUrl ? `${escapeHtml(fileColLabel)}` : ''; + tableContent = `${fileHeader}${rows}
${escapeHtml(entityLabel)}Count
`; } else { const rows = detail.map(r => { const raw = r.entity_name && r.entity_name !== '(not set)' ? r.entity_name : null; @@ -944,6 +949,12 @@

${escapeHtml(event.label)} } } + function fileNameFromUrl(url) { + if (!url) return '-'; + const parts = url.split('/'); + return parts[parts.length - 1] || url; + } + function formatChange(change) { if (change == null) return '-'; return (change >= 0 ? '+' : '') + (change * 100).toFixed(1) + '%'; diff --git a/gh-pages/lungmap/data/config.json b/gh-pages/lungmap/data/config.json index 11d3eefca..f30a01bda 100644 --- a/gh-pages/lungmap/data/config.json +++ b/gh-pages/lungmap/data/config.json @@ -32,7 +32,7 @@ "event_key": "dataset_analyze_in_terra_requested" }, { - "label": "Export to Terra\n(Cross-Dataset)", + "label": "Export to Terra\n(Cross-Project)", "event_key": "index_analyze_in_terra_requested" }, { @@ -40,7 +40,7 @@ "event_key": "dataset_bulk_download_requested" }, { - "label": "curl Command\n(Cross-Dataset)", + "label": "curl Command\n(Cross-Project)", "event_key": "index_bulk_download_requested" }, { @@ -48,7 +48,7 @@ "event_key": "dataset_file_manifest_requested" }, { - "label": "File Manifest\n(Cross-Dataset)", + "label": "File Manifest\n(Cross-Project)", "event_key": "index_file_manifest_requested" } ] diff --git a/gh-pages/lungmap/data/custom_events.json b/gh-pages/lungmap/data/custom_events.json index de00b5194..c83e3c8a3 100644 --- a/gh-pages/lungmap/data/custom_events.json +++ b/gh-pages/lungmap/data/custom_events.json @@ -2,9 +2,9 @@ { "event_name": "filter_selected", "label": "Filter Selections", - "current": 25, - "prior": 18, - "change": 0.3888888888888889 + "current": 22, + "prior": 25, + "change": -0.12 }, { "event_name": "index_bulk_download_requested", @@ -17,35 +17,35 @@ "event_name": "index_file_manifest_requested", "label": "Cohort File Manifest Requests", "current": 0, - "prior": 1, - "change": -1.0 + "prior": 0, + "change": null }, { "event_name": "index_analyze_in_terra_requested", "label": "Cohort Analyze in Terra Requests", "current": 0, - "prior": 5, - "change": -1.0 + "prior": 0, + "change": null }, { "event_name": "dataset_analyze_in_terra_requested", "label": "Project Analyze in Terra Requests", - "current": 2, - "prior": 1, - "change": 1.0 + "current": 1, + "prior": 2, + "change": -0.5 }, { "event_name": "dataset_bulk_download_requested", "label": "Project curl Download Requests", - "current": 14, - "prior": 20, - "change": -0.3 + "current": 15, + "prior": 14, + "change": 0.07142857142857142 }, { "event_name": "dataset_file_manifest_requested", "label": "Project File Manifest Requests", - "current": 2, + "current": 3, "prior": 2, - "change": 0.0 + "change": 0.5 } ] \ No newline at end of file diff --git a/gh-pages/lungmap/data/event_charts.json b/gh-pages/lungmap/data/event_charts.json index 360b1560b..49883bd39 100644 --- a/gh-pages/lungmap/data/event_charts.json +++ b/gh-pages/lungmap/data/event_charts.json @@ -15,11 +15,15 @@ { "month": "2026-04", "count": 2 + }, + { + "month": "2026-05", + "count": 1 } ] }, { - "label": "Cross-Dataset", + "label": "Cross-Project", "event_key": "index_analyze_in_terra_requested", "data": [ { @@ -29,6 +33,10 @@ { "month": "2026-04", "count": 0 + }, + { + "month": "2026-05", + "count": 0 } ] } @@ -48,11 +56,15 @@ { "month": "2026-04", "count": 14 + }, + { + "month": "2026-05", + "count": 15 } ] }, { - "label": "Cross-Dataset", + "label": "Cross-Project", "event_key": "index_bulk_download_requested", "data": [ { @@ -62,6 +74,10 @@ { "month": "2026-04", "count": 0 + }, + { + "month": "2026-05", + "count": 0 } ] } @@ -81,11 +97,15 @@ { "month": "2026-04", "count": 2 + }, + { + "month": "2026-05", + "count": 3 } ] }, { - "label": "Cross-Dataset", + "label": "Cross-Project", "event_key": "index_file_manifest_requested", "data": [ { @@ -95,6 +115,10 @@ { "month": "2026-04", "count": 0 + }, + { + "month": "2026-05", + "count": 0 } ] } diff --git a/gh-pages/lungmap/data/event_dataset_analyze_in_terra_requested_detail.json b/gh-pages/lungmap/data/event_dataset_analyze_in_terra_requested_detail.json index 82514fd87..0ac19b437 100644 --- a/gh-pages/lungmap/data/event_dataset_analyze_in_terra_requested_detail.json +++ b/gh-pages/lungmap/data/event_dataset_analyze_in_terra_requested_detail.json @@ -4,11 +4,5 @@ "entity_name": "(not set)", "count": 1, "dataset_title": "Bronchpulmonary Dysplasia (BPD)" - }, - { - "page_path": "/projects/fdadee7e-2097-45d5-bf81-cc280bd8348e/export-to-terra", - "entity_name": "(not set)", - "count": 1, - "dataset_title": "Alveolar capillary dysplasia with misalignment of the pulmonary veins (ACDMPV)" } ] \ No newline at end of file diff --git a/gh-pages/lungmap/data/event_dataset_bulk_download_requested_detail.json b/gh-pages/lungmap/data/event_dataset_bulk_download_requested_detail.json index 54f0aa23e..594992497 100644 --- a/gh-pages/lungmap/data/event_dataset_bulk_download_requested_detail.json +++ b/gh-pages/lungmap/data/event_dataset_bulk_download_requested_detail.json @@ -2,14 +2,14 @@ { "page_path": "/projects/1bdcecde-16be-4208-88f4-78cd2133d11d/get-curl-command", "entity_name": "(not set)", - "count": 5, + "count": 6, "dataset_title": "Guided construction of a single cell reference (CellRef) for mouse lung" }, { - "page_path": "/projects/fdadee7e-2097-45d5-bf81-cc280bd8348e/get-curl-command", + "page_path": "/projects/1977dc47-8414-4263-a870-6b0f207d8ab3/get-curl-command", "entity_name": "(not set)", - "count": 4, - "dataset_title": "Alveolar capillary dysplasia with misalignment of the pulmonary veins (ACDMPV)" + "count": 5, + "dataset_title": "Bronchpulmonary Dysplasia (BPD)" }, { "page_path": "/projects/6135382f-487d-4adb-9cf8-4d6634125b68/get-curl-command", @@ -18,15 +18,9 @@ "dataset_title": "Human Lung Reference Cell Atlas version 1.0" }, { - "page_path": "/projects/9393acbf-e8d8-4b96-9c71-996e245e5f23/get-curl-command", + "page_path": "/projects/fdadee7e-2097-45d5-bf81-cc280bd8348e/get-curl-command", "entity_name": "(not set)", "count": 2, - "dataset_title": "Bronchopulmonary dysplasia (BPD) with pulmonary hypertension associates with semaphorin signaling loss and functionally decreased FOXF1 expression" - }, - { - "page_path": "/projects/e651ac3e-03aa-46fa-9ed3-70c6fda4e440/get-curl-command", - "entity_name": "(not set)", - "count": 1, - "dataset_title": "Human Pediatric Developmental Epochs" + "dataset_title": "Alveolar capillary dysplasia with misalignment of the pulmonary veins (ACDMPV)" } ] \ No newline at end of file diff --git a/gh-pages/lungmap/data/event_dataset_file_manifest_requested_detail.json b/gh-pages/lungmap/data/event_dataset_file_manifest_requested_detail.json index b7af37963..751d46c5f 100644 --- a/gh-pages/lungmap/data/event_dataset_file_manifest_requested_detail.json +++ b/gh-pages/lungmap/data/event_dataset_file_manifest_requested_detail.json @@ -6,9 +6,15 @@ "dataset_title": "Bronchpulmonary Dysplasia (BPD)" }, { - "page_path": "/projects/6135382f-487d-4adb-9cf8-4d6634125b68/project-metadata", + "page_path": "/projects/e651ac3e-03aa-46fa-9ed3-70c6fda4e440/project-metadata", "entity_name": "(not set)", "count": 1, - "dataset_title": "Human Lung Reference Cell Atlas version 1.0" + "dataset_title": "Human Pediatric Developmental Epochs" + }, + { + "page_path": "/projects/f899709c-ae2c-4bb9-88f0-131142e6c7ec/project-metadata", + "entity_name": "(not set)", + "count": 1, + "dataset_title": "Human distal airways contain a multipotent secretory cell that can regenerate alveoli" } ] \ No newline at end of file diff --git a/gh-pages/lungmap/data/file_download_events.json b/gh-pages/lungmap/data/file_download_events.json index 4544dfaf7..7b1d432c5 100644 --- a/gh-pages/lungmap/data/file_download_events.json +++ b/gh-pages/lungmap/data/file_download_events.json @@ -1,3 +1,3 @@ { - "total": 1 + "total": 0 } \ No newline at end of file diff --git a/gh-pages/lungmap/data/file_downloads.json b/gh-pages/lungmap/data/file_downloads.json index 4544dfaf7..7b1d432c5 100644 --- a/gh-pages/lungmap/data/file_downloads.json +++ b/gh-pages/lungmap/data/file_downloads.json @@ -1,3 +1,3 @@ { - "total": 1 + "total": 0 } \ No newline at end of file diff --git a/gh-pages/lungmap/data/filter_selected.json b/gh-pages/lungmap/data/filter_selected.json index 0c9d0c394..62b4cfc4c 100644 --- a/gh-pages/lungmap/data/filter_selected.json +++ b/gh-pages/lungmap/data/filter_selected.json @@ -2,36 +2,24 @@ { "filterName": "genusSpecies", "filterValue": "Mus musculus", - "count": 5, - "change": 0.7222222222222221 - }, - { - "filterName": "projectTitle", - "filterValue": "Bronchopulmonary dysplasia (BPD) with pulmonary hypertension associates with semaphorin signaling lo", "count": 3, - "change": null + "change": -0.4193548387096775 }, { - "filterName": "genusSpecies", - "filterValue": "Homo sapiens", + "filterName": "projectTitle", + "filterValue": "Guided construction of a single cell reference (CellRef) for mouse lung", "count": 2, - "change": 1.0666666666666664 + "change": null }, { - "filterName": "specimenOrgan", - "filterValue": "Lung", + "filterName": "specimenDisease", + "filterValue": "idiopathic pulmonary fibrosis", "count": 2, - "change": 0.033333333333333215 - }, - { - "filterName": "contactName", - "filterValue": "Nicholas Banovich", - "count": 1, "change": null }, { "filterName": "contactName", - "filterValue": "Nicholas E. Banovich", + "filterValue": "Xin Sun", "count": 1, "change": null }, @@ -39,125 +27,155 @@ "filterName": "developmentStage", "filterValue": "human adult stage", "count": 1, + "change": -0.032258064516129115 + }, + { + "filterName": "donorDisease", + "filterValue": "chronic obstructive pulmonary disease", + "count": 1, "change": null }, { "filterName": "donorDisease", - "filterValue": "acute lung injury", + "filterValue": "idiopathic pulmonary fibrosis", "count": 1, "change": null }, { "filterName": "donorDisease", - "filterValue": "bronchopulmonary dysplasia", + "filterValue": "influenza A (H1N1)", "count": 1, "change": null }, { "filterName": "donorDisease", - "filterValue": "normal", + "filterValue": "lung disease", "count": 1, "change": null }, { - "filterName": "fileFormat", - "filterValue": "h5ad", + "filterName": "genusSpecies", + "filterValue": "Homo sapiens", "count": 1, - "change": 0.033333333333333215 + "change": -0.5161290322580645 }, { - "filterName": "fileSource", - "filterValue": "LungMAP", + "filterName": "modelOrgan", + "filterValue": "null", "count": 1, "change": null }, { - "filterName": "projectTitle", - "filterValue": "Bronchpulmonary Dysplasia (BPD)", + "filterName": "nucleicAcidSource", + "filterValue": "single cell", "count": 1, "change": null }, { "filterName": "projectTitle", - "filterValue": "Bulk RNA-Seq of Rabbit Lung Development and Premature Delivery to Model BPD", + "filterValue": "A scRNA-Seq atlas of human interstitial lung disease (ILD)", "count": 1, "change": null }, { "filterName": "projectTitle", - "filterValue": "Human Lung Reference Cell Atlas version 1.0", + "filterValue": "Bronchopulmonary dysplasia (BPD) with pulmonary hypertension associates with semaphorin signaling lo", "count": 1, - "change": null + "change": -0.6774193548387097 }, { "filterName": "projectTitle", - "filterValue": "Human Pediatric Developmental Epochs", + "filterValue": "Single Cell Sequence Analysis of Newborn Human Lung", "count": 1, "change": null }, { - "filterName": "projectTitle", - "filterValue": "Lung Spatial Xenium Pilot of Control Segmental Bronchus with Bronchpulmonary Dysplasia (BPD) Sample", + "filterName": "selectedCellType", + "filterValue": "epithelial cell of lung", + "count": 1, + "change": null + }, + { + "filterName": "selectedCellType", + "filterValue": "null", "count": 1, "change": null }, + { + "filterName": "specimenOrgan", + "filterValue": "Lung", + "count": 1, + "change": -0.5161290322580645 + }, { "filterName": "contactName", - "filterValue": "Edward E Morrisey", + "filterValue": "Nicholas Banovich", "count": 0, "change": -1.0 }, { "filterName": "contactName", - "filterValue": "Edward E. Morrisey", + "filterValue": "Nicholas E. 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"filterName": "institution", - "filterValue": "University of Rochester Medical Center", + "filterName": "projectTitle", + "filterValue": "Human Lung Reference Cell Atlas version 1.0", "count": 0, "change": -1.0 }, { - "filterName": "workflow", - "filterValue": "059d737a-5c42-457e-84d2-d12f384a1bd5", + "filterName": "projectTitle", + "filterValue": "Human Pediatric Developmental Epochs", "count": 0, "change": -1.0 }, { - "filterName": "workflow", - "filterValue": "90816808-a5f4-4d50-927f-b3f148c891ae", + "filterName": "projectTitle", + "filterValue": "Lung Spatial Xenium Pilot of Control Segmental Bronchus with Bronchpulmonary Dysplasia (BPD) Sample", "count": 0, "change": -1.0 } diff --git a/gh-pages/lungmap/data/meta.json b/gh-pages/lungmap/data/meta.json index 514608fa6..2cb0696ad 100644 --- a/gh-pages/lungmap/data/meta.json +++ b/gh-pages/lungmap/data/meta.json @@ -1,17 +1,17 @@ { - "generated_at": "2026-05-20 14:20:31", - "current_month": "2026-04", - "current_month_start": "2026-04-01", - 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"change": -0.7933333333333333 + "change": null }, { - "page": "/export/download-manifest", - "views": 0, - "change": -1.0 + "page": "/projects/780514ad-4c1e-40a8-9034-2ee7ec447dcb/export-to-terra", + "views": 1, + "change": null }, { - "page": "/export/export-to-terra", - "views": 0, - "change": -1.0 + "page": "/projects/834e0d16-71b6-4425-a8ab-022b5000961c/get-curl-command", + "views": 1, + "change": null }, { - "page": "/projects/0229ea32-ef02-489e-b11e-ff15819e22c1/project-matrices", - "views": 0, - "change": -1.0 + "page": "/projects/89771f5a-34c8-4cb5-b8e5-824a3ee5e1b5", + "views": 1, + "change": null }, { - "page": "/projects/0229ea32-ef02-489e-b11e-ff15819e22c1/project-metadata", - "views": 0, - "change": -1.0 + "page": "/projects/9393acbf-e8d8-4b96-9c71-996e245e5f23/project-metadata", + "views": 1, + "change": -0.7580645161290323 + }, + { + "page": "/projects/MTk3N2RjND", + "views": 1, + "change": null + }, + { + "page": "/projects/aef908bc-feec-4c54-9b3b-78b0adbd6502/project-matrices", + "views": 1, + "change": null + }, + { + "page": "/projects/ccea5717-a848-4c06-8d2d-d1b694e89441/export-to-terra", + "views": 1, + "change": null + }, + { + "page": "/projects/ccea5717-a848-4c06-8d2d-d1b694e89441/get-curl-command", + "views": 1, + "change": null + }, + { + "page": "/projects/e68d2111-316f-4ded-bf49-0ab332488665/get-curl-command", + "views": 1, + "change": null + }, + { + "page": "/projects/e99faee2-7706-4c1a-9d28-76c68320f549/export-to-terra", + "views": 1, + "change": null + }, + { + "page": "/projects/fdadee7e-2097-45d5-bf81-cc280bd8348e/project-matrices", + "views": 1, + "change": -0.8617511520737327 }, { - "page": "/projects/0e2b2441-92a5-424c-bce1-abc13435686f/export-to-terra", + "page": "/export", "views": 0, "change": -1.0 }, { - "page": "/projects/0e2b2441-92a5-424c-bce1-abc13435686f/get-curl-command", + "page": "/privacy", "views": 0, "change": -1.0 }, { - "page": "/projects/0e2b2441-92a5-424c-bce1-abc13435686f/project-metadata", + "page": "/projects/00f056f2-73ff-43ac-97ff-69ca10e38c89/project-metadata", "views": 0, "change": -1.0 }, { - "page": "/projects/20037472-ea1d-4ddb-9cd3-56a11a6f0f76/get-curl-command", + "page": "/projects/0229ea32-ef02-489e-b11e-ff15819e22c1/get-curl-command", "views": 0, "change": -1.0 }, { - "page": "/projects/4ae8c5c9-1520-4371-9827-6935661f6c84/project-metadata", + "page": "/projects/0e2b2441-92a5-424c-bce1-abc13435686f/project-matrices", "views": 0, "change": -1.0 }, { - "page": "/projects/5134c97d-bbdb-4d9d-b483-cdebeaf667b3/project-matrices", + "page": "/projects/3a02d15f-9c6a-4ef7-852b-4ddec733b70b", "views": 0, "change": -1.0 }, { - "page": "/projects/5134c97d-bbdb-4d9d-b483-cdebeaf667b3/project-metadata", + "page": "/projects/4ae8c5c9-1520-4371-9827-6935661f6c84", "views": 0, "change": -1.0 }, { - "page": "/projects/780514ad-4c1e-40a8-9034-2ee7ec447dcb", + "page": "/projects/4c40f6e7-b9f5-4528-8e2d-d1129014cec8", "views": 0, "change": -1.0 }, { - "page": "/projects/780514ad-4c1e-40a8-9034-2ee7ec447dcb/project-metadata", + "page": "/projects/4fb36692-6240-4146-a7e6-54543543230c/project-metadata", "views": 0, "change": -1.0 }, { - "page": "/projects/MDIyOWVhMz", + "page": "/projects/834e0d16-71b6-4425-a8ab-022b5000961c/project-matrices", "views": 0, "change": -1.0 }, { - "page": "/projects/MTk3N2RjND", + "page": "/projects/9393acbf-e8d8-4b96-9c71-996e245e5f23/export-to-terra", "views": 0, "change": -1.0 }, { - "page": "/projects/NjEzNTM4Mm", + "page": "/projects/9393acbf-e8d8-4b96-9c71-996e245e5f23/get-curl-command", "views": 0, "change": -1.0 }, { - "page": "/projects/ccea5717-a848-4c06-8d2d-d1b694e89441", + "page": "/projects/9393acbf-e8d8-4b96-9c71-996e245e5f23/project-matrices", "views": 0, "change": -1.0 }, { - "page": "/projects/e68d2111-316f-4ded-bf49-0ab332488665/get-curl-command", + "page": "/projects/aef908bc-feec-4c54-9b3b-78b0adbd6502", "views": 0, "change": -1.0 }, { - "page": "/projects/e99faee2-7706-4c1a-9d28-76c68320f549/export-to-terra", + "page": "/projects/e68d2111-316f-4ded-bf49-0ab332488665", "views": 0, "change": -1.0 }, { - "page": "/projects/e99faee2-7706-4c1a-9d28-76c68320f549/project-matrices", + "page": "/projects/fdadee7e-2097-45d5-bf81-cc280bd8348e/export-to-terra", "views": 0, "change": -1.0 }, { - "page": "/projects/f899709c-ae2c-4bb9-88f0-131142e6c7ec/get-curl-command", + "page": "/projects/fdadee7e-2097-45d5-bf81-cc280bd8348e/project-metadata", "views": 0, "change": -1.0 } diff --git a/gh-pages/lungmap/index.html b/gh-pages/lungmap/index.html index d68cbd150..839269a28 100644 --- a/gh-pages/lungmap/index.html +++ b/gh-pages/lungmap/index.html @@ -579,7 +579,8 @@

Filter Selections

if (chartDataByKey[card.event_key] && chartDataByKey[card.event_key].length > 0) { const canvasId = `event-trend-chart-${chartIndex++}`; const parts = card.label.split('\n'); - const chartTitle = escapeHtml(rowLabel) + ' Over Time' + (parts[1] ? ` (${escapeHtml(parts[1].replace(/[()]/g, ''))})` : ''); + const cardLabel = parts[0]; + const chartTitle = escapeHtml(cardLabel) + ' Over Time' + (parts[1] ? ` (${escapeHtml(parts[1].replace(/[()]/g, ''))})` : ''); html += `
@@ -661,6 +662,7 @@

${chartTitle}

if (!detail) continue; const hasDatasetTitle = detail.some(r => r.dataset_title); + const hasClickUrl = detail.some(r => r.click_url); const isEmpty = detail.length === 0; let tableContent; @@ -671,9 +673,12 @@

${chartTitle}

const label = r.dataset_title || r.entity_name || r.page_path || '-'; const link = r.page_path ? `${siteBase}${r.page_path.replace(/\/export.*/, '')}` : null; const cell = link ? `${escapeHtml(label)}` : escapeHtml(label); - return `${cell}${formatNumber(r.count)}`; + const fileTd = hasClickUrl ? `${escapeHtml(r.file_label || fileNameFromUrl(r.click_url))}` : ''; + return `${cell}${fileTd}${formatNumber(r.count)}`; }).join(''); - tableContent = `${rows}
${escapeHtml(entityLabel)}Count
`; + const fileColLabel = event.detail_file_column || 'File'; + const fileHeader = hasClickUrl ? `${escapeHtml(fileColLabel)}` : ''; + tableContent = `${fileHeader}${rows}
${escapeHtml(entityLabel)}Count
`; } else { const rows = detail.map(r => { const raw = r.entity_name && r.entity_name !== '(not set)' ? r.entity_name : null; @@ -944,6 +949,12 @@

${escapeHtml(event.label)} } } + function fileNameFromUrl(url) { + if (!url) return '-'; + const parts = url.split('/'); + return parts[parts.length - 1] || url; + } + function formatChange(change) { if (change == null) return '-'; return (change >= 0 ? '+' : '') + (change * 100).toFixed(1) + '%'; From 14fada6a925706e5f2ed30b54b5a879e7ec4c465 Mon Sep 17 00:00:00 2001 From: MillenniumFalconMechanic Date: Thu, 4 Jun 2026 12:30:56 -0700 Subject: [PATCH 2/4] fix: address copilot review feedback #4857 Co-Authored-By: Claude Opus 4.6 (1M context) --- .../analytics/static_site/template/index.html | 10 ++++++++-- 1 file changed, 8 insertions(+), 2 deletions(-) diff --git a/analytics/analytics_package/analytics/static_site/template/index.html b/analytics/analytics_package/analytics/static_site/template/index.html index 839269a28..234ffab81 100644 --- a/analytics/analytics_package/analytics/static_site/template/index.html +++ b/analytics/analytics_package/analytics/static_site/template/index.html @@ -951,8 +951,14 @@

${escapeHtml(event.label)} function fileNameFromUrl(url) { if (!url) return '-'; - const parts = url.split('/'); - return parts[parts.length - 1] || url; + try { + const pathname = new URL(url).pathname.replace(/\/+$/, ''); + const segments = pathname.split('/'); + return decodeURIComponent(segments[segments.length - 1] || url); + } catch (e) { + const parts = url.split('/'); + return parts[parts.length - 1] || url; + } } function formatChange(change) { From 68e2d58d5eafcfe6722d0c1516e69358e92bbb15 Mon Sep 17 00:00:00 2001 From: MillenniumFalconMechanic Date: Thu, 4 Jun 2026 12:49:19 -0700 Subject: [PATCH 3/4] fix: regenerate gh-pages sites with updated template #4857 Co-Authored-By: Claude Opus 4.6 (1M context) --- gh-pages/anvil-explorer/data/meta.json | 2 +- gh-pages/anvil-explorer/index.html | 10 ++++++++-- gh-pages/hca-explorer/data/meta.json | 2 +- gh-pages/hca-explorer/index.html | 10 ++++++++-- gh-pages/lungmap/data/meta.json | 2 +- gh-pages/lungmap/index.html | 10 ++++++++-- 6 files changed, 27 insertions(+), 9 deletions(-) diff --git a/gh-pages/anvil-explorer/data/meta.json b/gh-pages/anvil-explorer/data/meta.json index be13f1c91..69e45a0a7 100644 --- a/gh-pages/anvil-explorer/data/meta.json +++ b/gh-pages/anvil-explorer/data/meta.json @@ -1,5 +1,5 @@ { - "generated_at": "2026-06-04 10:32:26", + "generated_at": "2026-06-04 12:47:50", "current_month": "2026-05", "current_month_start": "2026-05-01", "current_month_end": "2026-05-31", diff --git a/gh-pages/anvil-explorer/index.html b/gh-pages/anvil-explorer/index.html index 839269a28..234ffab81 100644 --- a/gh-pages/anvil-explorer/index.html +++ b/gh-pages/anvil-explorer/index.html @@ -951,8 +951,14 @@

${escapeHtml(event.label)} function fileNameFromUrl(url) { if (!url) return '-'; - const parts = url.split('/'); - return parts[parts.length - 1] || url; + try { + const pathname = new URL(url).pathname.replace(/\/+$/, ''); + const segments = pathname.split('/'); + return decodeURIComponent(segments[segments.length - 1] || url); + } catch (e) { + const parts = url.split('/'); + return parts[parts.length - 1] || url; + } } function formatChange(change) { diff --git a/gh-pages/hca-explorer/data/meta.json b/gh-pages/hca-explorer/data/meta.json index 2d3440909..1a4875dbf 100644 --- a/gh-pages/hca-explorer/data/meta.json +++ b/gh-pages/hca-explorer/data/meta.json @@ -1,5 +1,5 @@ { - "generated_at": "2026-06-04 09:49:26", + "generated_at": "2026-06-04 12:47:03", "current_month": "2026-05", "current_month_start": "2026-05-01", "current_month_end": "2026-05-31", diff --git a/gh-pages/hca-explorer/index.html b/gh-pages/hca-explorer/index.html index 839269a28..234ffab81 100644 --- a/gh-pages/hca-explorer/index.html +++ b/gh-pages/hca-explorer/index.html @@ -951,8 +951,14 @@

${escapeHtml(event.label)} function fileNameFromUrl(url) { if (!url) return '-'; - const parts = url.split('/'); - return parts[parts.length - 1] || url; + try { + const pathname = new URL(url).pathname.replace(/\/+$/, ''); + const segments = pathname.split('/'); + return decodeURIComponent(segments[segments.length - 1] || url); + } catch (e) { + const parts = url.split('/'); + return parts[parts.length - 1] || url; + } } function formatChange(change) { diff --git a/gh-pages/lungmap/data/meta.json b/gh-pages/lungmap/data/meta.json index 2cb0696ad..c48cf38a9 100644 --- a/gh-pages/lungmap/data/meta.json +++ b/gh-pages/lungmap/data/meta.json @@ -1,5 +1,5 @@ { - "generated_at": "2026-06-04 10:37:00", + "generated_at": "2026-06-04 12:48:30", "current_month": "2026-05", "current_month_start": "2026-05-01", "current_month_end": "2026-05-31", diff --git a/gh-pages/lungmap/index.html b/gh-pages/lungmap/index.html index 839269a28..234ffab81 100644 --- a/gh-pages/lungmap/index.html +++ b/gh-pages/lungmap/index.html @@ -951,8 +951,14 @@

${escapeHtml(event.label)} function fileNameFromUrl(url) { if (!url) return '-'; - const parts = url.split('/'); - return parts[parts.length - 1] || url; + try { + const pathname = new URL(url).pathname.replace(/\/+$/, ''); + const segments = pathname.split('/'); + return decodeURIComponent(segments[segments.length - 1] || url); + } catch (e) { + const parts = url.split('/'); + return parts[parts.length - 1] || url; + } } function formatChange(change) { From 5c868f05a16a187272375f80dcce41d6a64e4a38 Mon Sep 17 00:00:00 2001 From: MillenniumFalconMechanic Date: Fri, 5 Jun 2026 09:27:20 -0700 Subject: [PATCH 4/4] fix: only emit heading when paired cards share the same label #4857 Co-Authored-By: Claude Opus 4.6 (1M context) --- .../analytics/static_site/template/index.html | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/analytics/analytics_package/analytics/static_site/template/index.html b/analytics/analytics_package/analytics/static_site/template/index.html index 234ffab81..d593b14f8 100644 --- a/analytics/analytics_package/analytics/static_site/template/index.html +++ b/analytics/analytics_package/analytics/static_site/template/index.html @@ -550,7 +550,10 @@

Filter Selections

for (let i = 0; i < countCards.length; i += 2) { const pair = countCards.slice(i, i + 2); const rowLabel = pair[0].label.split('\n')[0]; - html += `

${escapeHtml(rowLabel)}

`; + const pairSharesLabel = pair.length > 1 && pair[1].label.split('\n')[0] === rowLabel; + if (pairSharesLabel) { + html += `

${escapeHtml(rowLabel)}

`; + } // Stat cards row for (const card of pair) {