From 46729805fac08c5c73e3d2db9292e454b0e8b508 Mon Sep 17 00:00:00 2001 From: J Manuel RG <77511125+JManuelRG@users.noreply.github.com> Date: Thu, 28 Jan 2021 20:03:02 -0600 Subject: [PATCH 1/3] Create LICENSE.md MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit La información alojada aquí cuenta con licencia: GNU v3 --- LICENSE.md | 674 +++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 674 insertions(+) create mode 100644 LICENSE.md diff --git a/LICENSE.md b/LICENSE.md new file mode 100644 index 0000000..f288702 --- /dev/null +++ b/LICENSE.md @@ -0,0 +1,674 @@ + GNU GENERAL PUBLIC LICENSE + Version 3, 29 June 2007 + + Copyright (C) 2007 Free Software Foundation, Inc. + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The GNU General Public License is a free, copyleft license for +software and other kinds of works. + + The licenses for most software and other practical works are designed +to take away your freedom to share and change the works. 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Interpretation of Sections 15 and 16. + + If the disclaimer of warranty and limitation of liability provided +above cannot be given local legal effect according to their terms, +reviewing courts shall apply local law that most closely approximates +an absolute waiver of all civil liability in connection with the +Program, unless a warranty or assumption of liability accompanies a +copy of the Program in return for a fee. + + END OF TERMS AND CONDITIONS + + How to Apply These Terms to Your New Programs + + If you develop a new program, and you want it to be of the greatest +possible use to the public, the best way to achieve this is to make it +free software which everyone can redistribute and change under these terms. + + To do so, attach the following notices to the program. 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If not, see . + +Also add information on how to contact you by electronic and paper mail. + + If the program does terminal interaction, make it output a short +notice like this when it starts in an interactive mode: + + Copyright (C) + This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + This is free software, and you are welcome to redistribute it + under certain conditions; type `show c' for details. + +The hypothetical commands `show w' and `show c' should show the appropriate +parts of the General Public License. Of course, your program's commands +might be different; for a GUI interface, you would use an "about box". + + You should also get your employer (if you work as a programmer) or school, +if any, to sign a "copyright disclaimer" for the program, if necessary. +For more information on this, and how to apply and follow the GNU GPL, see +. + + The GNU General Public License does not permit incorporating your program +into proprietary programs. If your program is a subroutine library, you +may consider it more useful to permit linking proprietary applications with +the library. If this is what you want to do, use the GNU Lesser General +Public License instead of this License. But first, please read +. From cdbd6447bd696cb040387ceccad6cf7db475f02e Mon Sep 17 00:00:00 2001 From: J Manuel RG <77511125+JManuelRG@users.noreply.github.com> Date: Fri, 30 Apr 2021 13:01:30 -0500 Subject: [PATCH 2/3] Creado con Colaboratory --- .../FBA/0 Objetos en Python.ipynb" | 409 ++++++++++++++++++ 1 file changed, 409 insertions(+) create mode 100644 "3 Bioinform\303\241tica/FBA/0 Objetos en Python.ipynb" diff --git "a/3 Bioinform\303\241tica/FBA/0 Objetos en Python.ipynb" "b/3 Bioinform\303\241tica/FBA/0 Objetos en Python.ipynb" new file mode 100644 index 0000000..d8f5108 --- /dev/null +++ "b/3 Bioinform\303\241tica/FBA/0 Objetos en Python.ipynb" @@ -0,0 +1,409 @@ +{ + "nbformat": 4, + "nbformat_minor": 0, + "metadata": { + "colab": { + "name": "Objetos.ipynb", + "provenance": [], + "authorship_tag": "ABX9TyMONO6nqg7h9EV1XBkuY1rT", + "include_colab_link": true + }, + "kernelspec": { + "name": "python3", + "display_name": "Python 3" + }, + "language_info": { + "name": "python" + } + }, + "cells": [ + { + "cell_type": "markdown", + "metadata": { + "id": "view-in-github", + "colab_type": "text" + }, + "source": [ + "\"Open" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "id": "6K18vQvWjV9h" + }, + "source": [ + "# Objetos en Python\n", + "\n", + "Cualquier elemento en Python es un objeto\n", + "\n", + "Por ejemplo una librería:\n", + "Una librería contiene métodos (funciones), variables (constantes)\n", + "\n", + "Para llamar un elemento de un objeto en Python se usa:\n", + "Objeto.elemento" + ] + }, + { + "cell_type": "code", + "metadata": { + "id": "PK7F-zzujZMy" + }, + "source": [ + "import math" + ], + "execution_count": null, + "outputs": [] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "eIVY2WN-jnMw", + "outputId": "9f5d6dd3-1b4a-4e25-d84f-d43f76a88db9" + }, + "source": [ + "# llamar Pi(constante) de la librería Math(objeto)\n", + "math.pi" + ], + "execution_count": null, + "outputs": [ + { + "output_type": "execute_result", + "data": { + "text/plain": [ + "3.141592653589793" + ] + }, + "metadata": { + "tags": [] + }, + "execution_count": 2 + } + ] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "Al6yd3FPkJ-M", + "outputId": "1eb341bc-be20-4bf8-ad85-9020e614bc48" + }, + "source": [ + "# llamar función seno, del elemento pi\n", + "print(\"El seno de pi es:\")\n", + "math.sin(math.pi)" + ], + "execution_count": null, + "outputs": [ + { + "output_type": "stream", + "text": [ + "El seno de pi es:\n" + ], + "name": "stdout" + }, + { + "output_type": "execute_result", + "data": { + "text/plain": [ + "1.2246467991473532e-16" + ] + }, + "metadata": { + "tags": [] + }, + "execution_count": 4 + } + ] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "3mdOCFsGkZ-7", + "outputId": "1c5e32e6-321f-41c3-da61-2902f7bd5d30" + }, + "source": [ + "# Crear un objeto propio (clase):\n", + "\n", + "class Reaccion:\n", + " reactivos=[\"glucosa\", \"CO2\"]\n", + " productos=[\"agua\", \"R-OH\"]\n", + " dG = -14443 # J/mol\n", + " \n", + "# Llamar valores o métodos de cada objeto, indexados por ser listas\n", + "reactivo1 = Reaccion.reactivos[0]\n", + "reactivo2 = Reaccion.reactivos[1]\n", + "producto1 = Reaccion.productos[0]\n", + "producto2 = Reaccion.productos[1]\n", + "energia = Reaccion.dG\n", + "\n", + "\n", + "print(\"La reacción metabólica es:\")\n", + "print(f\"{reactivo1} + {reactivo2} --> {producto1} + {producto2}\")\n", + "print(f\"La energía libre de Gibbs de la reacción, es {energia} J/mol\")\n" + ], + "execution_count": null, + "outputs": [ + { + "output_type": "stream", + "text": [ + "La reacción metabólica es:\n", + "glucosa + CO2 --> agua + R-OH\n", + "La energía libre de Gibbs de la reacción, es -14443 J/mol\n" + ], + "name": "stdout" + } + ] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 35 + }, + "id": "OMqVJLtYuZLV", + "outputId": "f4e3f3c5-c318-447b-cdbf-efcbde2e4e52" + }, + "source": [ + "# Declarar Objetos: https://www.w3schools.com/python/python_classes.asp\n", + "\n", + "Ejemplo:\n", + "class Persona:\n", + " def __init__(self, nombre, edad):\n", + " self.nombre = nombre\n", + " self.edad = edad\n", + "\n", + "# Instanciar: Crear Variables similares con información diferente\n", + "# Crear diferentes instancias\n", + "persona1 = Persona(\"Andrés\", 20)\n", + "persona2 = Persona(\"Iván\", 20)\n", + "persona3 = Persona(\"José\", 20)\n", + "\n", + "persona2.nombre\n" + ], + "execution_count": null, + "outputs": [ + { + "output_type": "execute_result", + "data": { + "application/vnd.google.colaboratory.intrinsic+json": { + "type": "string" + }, + "text/plain": [ + "'Iván'" + ] + }, + "metadata": { + "tags": [] + }, + "execution_count": 24 + } + ] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 35 + }, + "id": "xxSm8YfqvrUB", + "outputId": "b2d0f5e9-947d-4b93-87c2-bbfb512f5fee" + }, + "source": [ + "# Declarar Objetos: https://www.w3schools.com/python/python_classes.asp\n", + "\n", + "class Modelo:\n", + "# self => este objeto\n", + " def __init__(self, primerarg, segundoarg):\n", + " self.metabolitos=primerarg # Propiedad metabolitos de este objeto\n", + " self.productos = segundoarg # Propiedad productos de este objeto\n", + "\n", + "# Instanciar: Crear Variables similares con información diferente\n", + "# Crear diferentes instancias\n", + "organismo1 = Modelo(primerarg=[\"glucosa\",\"alcohol\"], segundoarg=[\"agua\", \"producto industrial\"])\n", + "organismo2 = Modelo([\"dextrosa\",\"ácido\"], [\"agua\", \"producto industrial 2\"])\n", + "\n", + "\n", + "organismo2.productos[1]" + ], + "execution_count": null, + "outputs": [ + { + "output_type": "execute_result", + "data": { + "application/vnd.google.colaboratory.intrinsic+json": { + "type": "string" + }, + "text/plain": [ + "'producto industrial 2'" + ] + }, + "metadata": { + "tags": [] + }, + "execution_count": 29 + } + ] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 35 + }, + "id": "U86i_fumpBJK", + "outputId": "3c716e75-b897-4aaa-cabd-1fd7f16a8460" + }, + "source": [ + "# Declarar Objetos: https://www.w3schools.com/python/python_classes.asp\n", + "\n", + "class Modelo:\n", + "# self => este objeto\n", + " def __init__(self, primerarg, segundoarg):\n", + " self.metabolitos=primerarg # Propiedad metabolitos de este objeto\n", + " self.productos = segundoarg # Propiedad productos de este objeto\n", + "\n", + "# Instanciar: Crear Variables similares con información diferente\n", + "# Crear diferentes instancias\n", + "organismo1 = Modelo(primerarg=[\"glucosa\",\"alcohol\"], segundoarg=[\"agua\", \"producto industrial\"])\n", + "organismo2 = Modelo([\"dextrosa\",\"ácido\"], [\"agua\", \"producto industrial 2\"])\n", + "\n", + "\n", + "organismo2.productos[1]" + ], + "execution_count": 30, + "outputs": [ + { + "output_type": "execute_result", + "data": { + "application/vnd.google.colaboratory.intrinsic+json": { + "type": "string" + }, + "text/plain": [ + "'producto industrial 2'" + ] + }, + "metadata": { + "tags": [] + }, + "execution_count": 30 + } + ] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 35 + }, + "id": "Y6VrpfVM5_im", + "outputId": "3d30ce81-7614-4b64-85c4-d037d21cf733" + }, + "source": [ + "# De manera más sencilla:\n", + "# Declarar Objetos: https://www.w3schools.com/python/python_classes.asp\n", + "\n", + "class Modelo:\n", + "# self => este objeto\n", + " def __init__(self, metabolitos, productos):\n", + " self.metabolitos=metabolitos # Propiedad metabolitos de este objeto\n", + " self.productos = productos # Propiedad productos de este objeto\n", + "\n", + "# Instanciar: Crear Variables similares con información diferente\n", + "# Crear diferentes instancias\n", + "organismo1 = Modelo([\"glucosa\",\"alcohol\"], [\"agua\", \"producto industrial\"])\n", + "organismo2 = Modelo([\"dextrosa\",\"ácido\"], [\"agua\", \"producto industrial 2\"])\n", + "\n", + "\n", + "organismo2.productos[1]" + ], + "execution_count": 32, + "outputs": [ + { + "output_type": "execute_result", + "data": { + "application/vnd.google.colaboratory.intrinsic+json": { + "type": "string" + }, + "text/plain": [ + "'producto industrial 2'" + ] + }, + "metadata": { + "tags": [] + }, + "execution_count": 32 + } + ] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "eXv174VV6UiW", + "outputId": "85fcf150-8a1c-48dd-a1d3-6fcab81ba3fd" + }, + "source": [ + "# Instalar CobraPy\n", + "# Emular terminal linux con !\n", + "!pip install cobra" + ], + "execution_count": 33, + "outputs": [ + { + "output_type": "stream", + "text": [ + "Requirement already satisfied: cobra in /usr/local/lib/python3.7/dist-packages (0.22.0)\n", + "Requirement already satisfied: depinfo in /usr/local/lib/python3.7/dist-packages (from cobra) (1.7.0)\n", + "Requirement already satisfied: pydantic~=1.6 in /usr/local/lib/python3.7/dist-packages (from cobra) (1.8.1)\n", + "Requirement already satisfied: appdirs~=1.4 in /usr/local/lib/python3.7/dist-packages (from cobra) (1.4.4)\n", + "Requirement already satisfied: ruamel.yaml~=0.16 in /usr/local/lib/python3.7/dist-packages (from cobra) (0.17.4)\n", + "Requirement already satisfied: pandas~=1.0 in /usr/local/lib/python3.7/dist-packages (from cobra) (1.1.5)\n", + "Requirement already satisfied: swiglpk in /usr/local/lib/python3.7/dist-packages (from cobra) (5.0.3)\n", + "Requirement already satisfied: rich>=8.0 in /usr/local/lib/python3.7/dist-packages (from cobra) (10.1.0)\n", + "Requirement already satisfied: numpy~=1.13 in /usr/local/lib/python3.7/dist-packages (from cobra) (1.19.5)\n", + "Requirement 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h11==0.* in /usr/local/lib/python3.7/dist-packages (from httpcore<0.14.0,>=0.13.0->httpx~=0.14->cobra) (0.12.0)\n", + "Requirement already satisfied: idna; extra == \"idna2008\" in /usr/local/lib/python3.7/dist-packages (from rfc3986[idna2008]<2,>=1.3->httpx~=0.14->cobra) (2.10)\n" + ], + "name": "stdout" + } + ] + } + ] +} \ No newline at end of file From 7ea8d952c2998d3f6222681ac7973219da37cfa6 Mon Sep 17 00:00:00 2001 From: J Manuel RG <77511125+JManuelRG@users.noreply.github.com> Date: Fri, 7 May 2021 20:53:49 -0500 Subject: [PATCH 3/3] Creado con Colaboratory --- 1 Uso del lenguaje/2.1 El Comando Input.ipynb | 254 ++++++++++++++++++ 1 file changed, 254 insertions(+) create mode 100644 1 Uso del lenguaje/2.1 El Comando Input.ipynb diff --git a/1 Uso del lenguaje/2.1 El Comando Input.ipynb b/1 Uso del lenguaje/2.1 El Comando Input.ipynb new file mode 100644 index 0000000..903fc8a --- /dev/null +++ b/1 Uso del lenguaje/2.1 El Comando Input.ipynb @@ -0,0 +1,254 @@ +{ + "nbformat": 4, + "nbformat_minor": 0, + "metadata": { + "colab": { + "name": "Entrada de Datos.ipynb", + "provenance": [], + "authorship_tag": "ABX9TyP2s9KBjQLvmtnff+pn9+AN", + "include_colab_link": true + }, + "kernelspec": { + "name": "python3", + "display_name": "Python 3" + }, + "language_info": { + "name": "python" + } + }, + "cells": [ + { + "cell_type": "markdown", + "metadata": { + "id": "view-in-github", + "colab_type": "text" + }, + "source": [ + "\"Open" + ] + }, + { + "cell_type": "markdown", + "metadata": { + "id": "-Bfm7SA0a7mT" + }, + "source": [ + "# Entrada de Datos\n", + "\n", + "Es el ingreso de datos, de cualquier tipo, de un usuario del programa a python.\n", + "\n", + "## Método input\n", + "\n", + "Sintaxis:\n", + "var = input(\"texto que se muestra al usuario\")\n", + "\n", + "***var*** es la variable donde se guardará la información introducida por el usuario" + ] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "IKlS6Zczbh3R", + "outputId": "5ec48623-c890-487a-bc73-c7ca086b7e09" + }, + "source": [ + "# Ingreso de Texto\n", + "\n", + "nombre = input(\"¿Cómo te llamas? \")" + ], + "execution_count": 1, + "outputs": [ + { + "output_type": "stream", + "text": [ + "¿Cómo te llamas?Manuel\n" + ], + "name": "stdout" + } + ] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "w7K6MjZBbwNL", + "outputId": "8ae2e25b-301c-4371-cc36-cda09d5d93c2" + }, + "source": [ + "print(nombre)" + ], + "execution_count": 2, + "outputs": [ + { + "output_type": "stream", + "text": [ + "Manuel\n" + ], + "name": "stdout" + } + ] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "f5BfnCvgb6S5", + "outputId": "351f1aa8-671f-4ab6-a853-b630a637e9d3" + }, + "source": [ + "# Programa para saludar\n", + "nombre = input(\"¿Cómo te llamas? \")\n", + "# Salida: Impresión con formato:\n", + "print(f\"¡Hola {nombre}!\")" + ], + "execution_count": 4, + "outputs": [ + { + "output_type": "stream", + "text": [ + "¿Cómo te llamas? José\n", + "¡Hola José!\n" + ], + "name": "stdout" + } + ] + }, + { + "cell_type": "markdown", + "metadata": { + "id": "OrKcqxPHckEf" + }, + "source": [ + "# Valores Numéricos\n", + "\n", + "Para leer valores numéricos se sigue la misma sintaxis:\n", + "\n", + "## Método input\n", + "Sintaxis:\n", + "var = input(\"texto que se muestra al usuario\")\n", + "\n", + "***var*** es la variable donde se guardará la información introducida por el usuario\n", + "\n", + "Sin embargo, el valor introducido se almacena como texto" + ] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "_jEpcvBUcfsK", + "outputId": "c317542c-66fd-4015-fc90-87c11265f53d" + }, + "source": [ + "# Valores numéricos\n", + "numero = input(\"Escribe un número: \")\n", + "type(numero)" + ], + "execution_count": 6, + "outputs": [ + { + "output_type": "stream", + "text": [ + "Escribe un número: 33\n" + ], + "name": "stdout" + }, + { + "output_type": "execute_result", + "data": { + "text/plain": [ + "str" + ] + }, + "metadata": { + "tags": [] + }, + "execution_count": 6 + } + ] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "Z1wIOQUzdCw2", + "outputId": "1925936f-77cb-4f79-da59-481afbf28cb6" + }, + "source": [ + "# Sumar dos números\n", + "numero1 = input(\"Escribe un número: \")\n", + "numero2 = input(\"Escribe un número: \")\n", + "print(f\"La suma de los números es {numero1+numero2}\")\n", + "\n", + "# Aquí concatena en lugar de sumar" + ], + "execution_count": 7, + "outputs": [ + { + "output_type": "stream", + "text": [ + "Escribe un número: 12\n", + "Escribe un número: 10\n", + "La suma de los números es 1210\n" + ], + "name": "stdout" + } + ] + }, + { + "cell_type": "markdown", + "metadata": { + "id": "AW8950T6d02H" + }, + "source": [ + "# Conversión entre tipos de variables\n", + "\n", + "Necesitamos convertir esas cadenas a números (entero, flotante, complejo ...)\n", + "\n", + "Se usa la transformación con los métodos: \n", + "float(var), int(var)" + ] + }, + { + "cell_type": "code", + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "CUAks1gjdfcS", + "outputId": "f96ca085-6d9a-4476-85ac-ef5a00829e41" + }, + "source": [ + "# Sumar dos números, convirtiendo la entrada a flotante\n", + "print(\"Suma de dos números\")\n", + "numero1 = float(input(\"Escribe un número: \"))\n", + "numero2 = float(input(\"Escribe un número: \"))\n", + "print(f\"La suma de los números es {numero1+numero2}\")\n" + ], + "execution_count": 10, + "outputs": [ + { + "output_type": "stream", + "text": [ + "Suma de dos números\n", + "Escribe un número: 12\n", + "Escribe un número: 222.3\n", + "La suma de los números es 234.3\n" + ], + "name": "stdout" + } + ] + } + ] +} \ No newline at end of file