Forum's guideline !!!

[Miachol]

Introduction

The main aim of this forum is to provide a fully free place sharing the bioinformatics tools/scripts and databases. The resources recorded in the posts will be integrated into the BioInstaller configuration files. Please read this post when you want to submit a new post in this forum.

Allowed posts

• Any bioinformatics related papers
• Any bioinformatics related tools/scripts and databases (Both open and restricted)
• Suggestions for improving this community
• Bug report

Reference format for sharing papers

Required fields: author name., title. journal, year, project URL, tags

• Sundaram, L., et al., Predicting the clinical impact of human mutation with deep neural networks. Nat Genet, 2018. URL: https://basespace.illumina.com/s/cPgCSmecvhb4 Tags: clinical, mutation annotation

Reference format for uploading new BioInstaller item

There is three part required for uploading a new BioInstaller item:

• Configuration file: (github.toml, nongithub.toml, db_annovar.toml, db_main.toml, or new) found in here
• title: Short title
• description: Summary of the tools/scripts and databases
• publication: Publication papers information
• TOML format configuration (see here)

Demo 1:

Configuration file: github.toml
description: GATK variant calling workflow based on [snakemake] (https://snakemake.readthedocs.io/en/stable/)
publication: Not yet

[snakemake_dna_gatk_flow]
github_url = "https://github.com/snakemake-workflows/dna-seq-gatk-variant-calling"

Demo 2:

Configuration file: nongithub.toml
description: Mirror URL of GATK4

[gatk4_jhuang_mirror]
source_url = "http://bioinfo.rjh.com.cn/download/bioinstaller/gatk/gatk-{{version}}.zip"
version_available = ["4.0.6.0", "4.0.0.0"]