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summarize.py
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317 lines (257 loc) · 10.5 KB
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"""
Experiment Evaluation Summary Generator
Automatically scans .workspace/experiments/*/eval/summary_metrics.json,
generates a Markdown summary report for review by other agents or humans.
Usage:
python summarize.py
python summarize.py --experiments-dir .workspace/experiments
python summarize.py --output .workspace/experiments/SUMMARY.md
"""
import json
import os
import sys
import argparse
import datetime
from pathlib import Path
# Parameter name -> LaTeX display name
PARAM_DISPLAY = {
"r": r"log₁₀ r",
"n_t": r"n_t",
"kappa10": r"log₁₀ κ₁₀",
"T_re": r"log₁₀ T_re",
"DN_re": r"ΔN_re",
"Omega_bh2": r"Ω_b h²",
"Omega_ch2": r"Ω_c h²",
"H0": r"H₀",
"A_s": r"log(10¹⁰ A_s)",
}
# Task ordering
TASK_ORDER = ["PTA", "LISA", "LIGO", "joint"]
TASK_DISPLAY = {"PTA": "PTA", "LISA": "LISA", "LIGO": "LIGO", "joint": "Joint"}
def discover_experiments(experiments_dir):
"""Scan all subdirectories under experiments_dir that contain eval/summary_metrics.json."""
results = []
exp_dir = Path(experiments_dir)
if not exp_dir.is_dir():
return results
for sub in sorted(exp_dir.iterdir()):
summary_path = sub / "eval" / "summary_metrics.json"
if summary_path.is_file():
results.append((sub.name, str(summary_path)))
return results
def load_summary(path):
with open(path, "r", encoding="utf-8") as f:
return json.load(f)
def fmt(val, digits=4):
"""Format a floating-point number."""
if val is None:
return "N/A"
return f"{val:.{digits}f}"
def render_per_experiment(name, data):
"""Render a detailed report for a single experiment."""
lines = []
lines.append(f"### {name}\n")
lines.append(f"- **Timestamp**: {data.get('timestamp', 'N/A')}")
lines.append(f"- **Num posterior samples**: {data.get('num_samples', 'N/A')}")
lines.append(f"- **Tasks evaluated**: {', '.join(data.get('tasks_evaluated', []))}")
lines.append("")
per_task = data.get("per_task_metrics", {})
tasks = [t for t in TASK_ORDER if t in per_task]
# ---- Average metrics per task ----
lines.append("#### Average Metrics by Task\n")
lines.append(f"| Task | R² | NMAE (%) | Rel. CI Width | Samples |")
lines.append(f"|------|----|----------|---------------|---------|")
for task in tasks:
m = per_task[task]
lines.append(
f"| {TASK_DISPLAY.get(task, task)} "
f"| {fmt(m.get('avg_r2'))} "
f"| {fmt(m.get('avg_nmae_pct'), 2)} "
f"| {fmt(m.get('avg_rel_ci_width'))} "
f"| {m.get('n_samples', 'N/A')} |"
)
lines.append("")
# ---- R² matrix per parameter x task ----
lines.append("#### R² by Parameter & Task\n")
# Collect all parameter names (preserve order)
param_names = []
for task in tasks:
for p in per_task[task].get("per_param", {}):
if p not in param_names:
param_names.append(p)
header = "| Parameter | " + " | ".join(TASK_DISPLAY.get(t, t) for t in tasks) + " |"
sep = "|-----------|" + "|".join(["--------"] * len(tasks)) + "|"
lines.append(header)
lines.append(sep)
for p in param_names:
display = PARAM_DISPLAY.get(p, p)
row = f"| {display} "
for task in tasks:
val = per_task[task].get("per_param", {}).get(p, {}).get("r2", None)
row += f"| {fmt(val)} "
row += "|"
lines.append(row)
lines.append("")
# ---- NMAE matrix per parameter x task ----
lines.append("#### NMAE (%) by Parameter & Task\n")
header = "| Parameter | " + " | ".join(TASK_DISPLAY.get(t, t) for t in tasks) + " |"
sep = "|-----------|" + "|".join(["--------"] * len(tasks)) + "|"
lines.append(header)
lines.append(sep)
for p in param_names:
display = PARAM_DISPLAY.get(p, p)
row = f"| {display} "
for task in tasks:
val = per_task[task].get("per_param", {}).get(p, {}).get("nmae_pct", None)
row += f"| {fmt(val, 2)} "
row += "|"
lines.append(row)
lines.append("")
# ---- MAE per parameter ----
lines.append("#### MAE by Parameter & Task\n")
header = "| Parameter | " + " | ".join(TASK_DISPLAY.get(t, t) for t in tasks) + " |"
sep = "|-----------|" + "|".join(["--------"] * len(tasks)) + "|"
lines.append(header)
lines.append(sep)
for p in param_names:
display = PARAM_DISPLAY.get(p, p)
row = f"| {display} "
for task in tasks:
val = per_task[task].get("per_param", {}).get(p, {}).get("mae", None)
row += f"| {fmt(val)} "
row += "|"
lines.append(row)
lines.append("")
# ---- Rel. CI Width per parameter ----
lines.append("#### Relative CI Width by Parameter & Task\n")
header = "| Parameter | " + " | ".join(TASK_DISPLAY.get(t, t) for t in tasks) + " |"
sep = "|-----------|" + "|".join(["--------"] * len(tasks)) + "|"
lines.append(header)
lines.append(sep)
for p in param_names:
display = PARAM_DISPLAY.get(p, p)
row = f"| {display} "
for task in tasks:
val = per_task[task].get("per_param", {}).get(p, {}).get("rel_ci_width", None)
row += f"| {fmt(val)} "
row += "|"
lines.append(row)
lines.append("")
# ---- KS statistics ----
lines.append("#### KS Statistic by Parameter & Task\n")
header = "| Parameter | " + " | ".join(TASK_DISPLAY.get(t, t) for t in tasks) + " |"
sep = "|-----------|" + "|".join(["--------"] * len(tasks)) + "|"
lines.append(header)
lines.append(sep)
for p in param_names:
display = PARAM_DISPLAY.get(p, p)
row = f"| {display} "
for task in tasks:
val = per_task[task].get("per_param", {}).get(p, {}).get("ks_stat", None)
row += f"| {fmt(val)} "
row += "|"
lines.append(row)
lines.append("")
return "\n".join(lines)
def _cross_param_table(lines, title, exp_names, param_names, all_data, task, key, digits=4):
"""Render a cross-experiment per-parameter metric table."""
lines.append(f"### {title}\n")
header = "| Parameter | " + " | ".join(exp_names) + " |"
sep = "|-----------|" + "|".join(["--------"] * len(exp_names)) + "|"
lines.append(header)
lines.append(sep)
for p in param_names:
display = PARAM_DISPLAY.get(p, p)
row = f"| {display} "
for _, data in all_data:
task_m = data.get("per_task_metrics", {}).get(task, {})
val = task_m.get("per_param", {}).get(p, {}).get(key, None)
row += f"| {fmt(val, digits)} "
row += "|"
lines.append(row)
lines.append("")
def render_cross_comparison(all_data):
"""Cross-experiment comparison: output R² / MAE / Rel. CI Width per parameter for each task."""
if len(all_data) < 2:
return ""
lines = []
lines.append("## Cross-Experiment Comparison\n")
# Collect parameters
param_names = []
for name, data in all_data:
joint = data.get("per_task_metrics", {}).get("joint", {})
for p in joint.get("per_param", {}):
if p not in param_names:
param_names.append(p)
if not param_names:
return ""
exp_names = [n for n, _ in all_data]
# For each task, output three tables: R², MAE, Rel. CI Width
for task in ["joint", "PTA", "LISA", "LIGO"]:
has_data = any(
task in data.get("per_task_metrics", {})
for _, data in all_data
)
if not has_data:
continue
task_label = TASK_DISPLAY.get(task, task)
lines.append(f"## {task_label} — Cross-Experiment\n")
_cross_param_table(lines, f"{task_label} R²", exp_names, param_names, all_data, task, "r2")
_cross_param_table(lines, f"{task_label} MAE", exp_names, param_names, all_data, task, "mae")
_cross_param_table(lines, f"{task_label} Relative CI Width", exp_names, param_names, all_data, task, "rel_ci_width")
return "\n".join(lines)
def generate_summary(experiments_dir, output_path):
"""Main function: scan + render + write output."""
discovered = discover_experiments(experiments_dir)
if not discovered:
print(f"No experiments found under {experiments_dir}")
return
print(f"Discovered {len(discovered)} experiment(s):")
for name, path in discovered:
print(f" - {name}")
# Load
all_data = []
for name, path in discovered:
data = load_summary(path)
all_data.append((name, data))
# Render
lines = []
lines.append(f"# Experiment Evaluation Summary\n")
lines.append(f"- **Generated**: {datetime.datetime.now().strftime('%Y-%m-%d %H:%M:%S')}")
lines.append(f"- **Source**: `{experiments_dir}`")
lines.append(f"- **Experiments**: {len(all_data)}")
lines.append("")
# Per-experiment detailed report
for name, data in all_data:
lines.append("---\n")
lines.append(render_per_experiment(name, data))
# Cross-experiment comparison
cross = render_cross_comparison(all_data)
if cross:
lines.append("---\n")
lines.append(cross)
md_content = "\n".join(lines)
# Write output
out_dir = os.path.dirname(output_path) or "."
os.makedirs(out_dir, exist_ok=True)
with open(output_path, "w", encoding="utf-8") as f:
f.write(md_content)
print(f"\nSummary written to {output_path}")
print(f"Total lines: {len(md_content.splitlines())}")
def main():
# Default to script directory as base
script_dir = os.path.dirname(os.path.abspath(__file__))
project_root = os.path.dirname(os.path.dirname(script_dir))
default_exp_dir = os.path.join(project_root, ".workspace", "experiments")
default_output = os.path.join(project_root, ".workspace", "experiments", "SUMMARY.md")
parser = argparse.ArgumentParser(description="Generate evaluation summary from experiments")
parser.add_argument("--experiments-dir", type=str, default=default_exp_dir,
help="Root directory containing experiment packages "
"(default: .workspace/experiments/)")
parser.add_argument("--output", type=str, default=default_output,
help="Output Markdown file path "
"(default: .workspace/experiments/SUMMARY.md)")
args = parser.parse_args()
generate_summary(args.experiments_dir, args.output)
if __name__ == "__main__":
main()