From 9bc9d2b99c6f9ee5138127217056d286bcaad607 Mon Sep 17 00:00:00 2001
From: gautam8387 <goutamahuja8387@gmail.com>
Date: Tue, 2 Sep 2025 15:33:30 +0530
Subject: [PATCH 1/2] contnuous testing

---
 .github/workflows/pytest.yml | 41 ++++++++++++++++++++++++++++++++++++
 README.md                    |  2 +-
 2 files changed, 42 insertions(+), 1 deletion(-)
 create mode 100644 .github/workflows/pytest.yml

diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml
new file mode 100644
index 0000000..28120d9
--- /dev/null
+++ b/.github/workflows/pytest.yml
@@ -0,0 +1,41 @@
+name: Tests
+
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.13"]
+
+    steps:
+    - uses: actions/checkout@v4
+    
+    - name: Install uv
+      uses: astral-sh/setup-uv@v4
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install dependencies
+      run: uv sync --all-extras --dev
+
+    - name: Run linting (ruff check)
+      run: uv run ruff check .
+      shell: bash
+      
+    - name: Run type checking (mypy)
+      run: uv run mypy .
+      shell: bash
+      continue-on-error: true
+
+    - name: Run tests with pytest
+      run: uv run pytest
+      shell: bash
diff --git a/README.md b/README.md
index 30c91d9..b360294 100644
--- a/README.md
+++ b/README.md
@@ -149,7 +149,7 @@ We welcome contributions! Please see our contribution guidelines for details.
  
 ### Development Setup
 ```bash
-git clone <repository-url>
+git clone https://github.com/NygenAnalytics/CyteOnto.git
 cd CyteOnto
 uv sync --dev
 ```

From 6577be3d911da295eba61f40a0d43cdd82e7c8d8 Mon Sep 17 00:00:00 2001
From: gautam8387 <goutamahuja8387@gmail.com>
Date: Tue, 2 Sep 2025 15:40:28 +0530
Subject: [PATCH 2/2] updated url

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index b360294..b02bc54 100644
--- a/README.md
+++ b/README.md
@@ -18,7 +18,7 @@ CyteOnto helps researchers benchmark cell type annotation algorithms by measurin
 ### Install
 ```bash
 # Clone the repository
-git clone <repository-url>
+git clone https://github.com/NygenAnalytics/CyteOnto.git
 cd CyteOnto
  
 # Setup environment