Skip to content

How to get the embedding vector for cells to draw the UMAP for scGCN #13

@Jinyu2019

Description

@Jinyu2019

Hi, I am learning the scGCN method, and want to draw the UMAP figure as in your article (Figure 4a). After running the 'train.py', I got serveral excel files, but how can I get the low-represented vectors for cells computed by GCN model to draw the UMAP? Thanks.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions