add sparql query for cq10

Author: simleo

docs/sparql/cq10.py

@@ -0,0 +1,37 @@
+"""\
+This script contains the SPARQL query for Competency Question 10 "What is the
+script used to wrap up a software component?". In the discussion on
+https://github.com/ResearchObject/workflow-run-crate/issues/18 we realized
+that we were already representing the wrappers, and the issue was actually to
+represent their dependencies. The corresponding specification was added to the
+profiles in https://github.com/ResearchObject/workflow-run-crate/pull/67.
+"""
+
+import rdflib
+from pathlib import Path
+
+CRATE = Path("crate")
+
+g = rdflib.Graph()
+g.parse(CRATE/"ro-crate-metadata.json")
+
+QUERY = """\
+PREFIX s: <http://schema.org/>
+
+SELECT ?tool ?req ?main_req ?version
+WHERE {
+?tool a s:SoftwareApplication .
+?action a s:CreateAction .
+?action s:instrument ?tool .
+?tool s:softwareRequirements ?req .
+?tool s:mainEntity ?main_req .
+?req s:version ?version .
+}
+"""
+
+qres = g.query(QUERY)
+for row in qres:
+    print(f"Tool: {row.tool}")
+    print(f"  main requirement: {row.main_req}")
+    print(f"  requirement: {row.req}")
+    print(f"    version: {row.version}")

docs/sparql/crate/ro-crate-metadata.json

@@ -521,6 +521,17 @@
                 "SoftwareApplication",
                 "File"
             ],
+            "softwareRequirements": [
+                {
+                    "@id": "scripts/classify_tumor.py"
+                },
+                {
+                    "@id": "https://pypi.org/project/numpy/1.26.2/"
+                }
+            ],
+            "mainEntity": {
+                "@id": "scripts/classify_tumor.py"
+            },
             "input": [
                 {
                     "@id": "classify_tumor.cwl#batch-size"
@@ -555,6 +566,17 @@
             ],
             "sha1": "0f504b9b002b943ca3e564af1d3f9297ca637317"
         },
+        {
+            "@id": "scripts/classify_tumor.py",
+            "@type": "SoftwareApplication",
+            "version": "0.1"
+        },
+        {
+            "@id": "https://pypi.org/project/numpy/1.26.2/",
+            "@type": "SoftwareApplication",
+            "name": "NumPy",
+            "version": "1.26.2"
+        },
         {
             "@id": "predictions.cwl#extract-tissue-low",
             "@type": "HowToStep",