We currently use agilents sureselect per default for calculating hs_metrics. hsmetrics calculations will fail for non-human genomes since the sequence dictionaries differ (i.e. chromosome lists):
Caused by: net.sf.samtools.util.SequenceUtil$SequenceListsDifferException: Sequence dictionaries are not the same size (1, 93)
Suggested solutions:
-
run hs_metrics manually for relevant samples for now
-
put target files in directory structure in which genome can be deduced, and if genome_build differs, don't run hs_metrics
We currently use agilents sureselect per default for calculating hs_metrics. hsmetrics calculations will fail for non-human genomes since the sequence dictionaries differ (i.e. chromosome lists):
Caused by: net.sf.samtools.util.SequenceUtil$SequenceListsDifferException: Sequence dictionaries are not the same size (1, 93)
Suggested solutions:
run hs_metrics manually for relevant samples for now
put target files in directory structure in which genome can be deduced, and if genome_build differs, don't run hs_metrics