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Fix gem pair model ignoring custom lockfile and Bundler 1 twins (#749, #751) #1942

Job	Run time
clippy	42s
e2e-build (macos-latest)	40m 32s
hosted-e2e	1m 38s
lint-ecosystems	31m 16s
coverage	13m 4s
test (windows-latest)	33m 1s
e2e-build (windows-latest)	6m 58s
node-addon	31m 16s
e2e-build (ubuntu-latest)	31m 38s
dispatch-tests	31m 38s
release-readiness	9s
test-release	31m 22s
docker-base	4m 48s
test (macos-latest)	40m 32s
coverage-docker (npm)	6m 28s
coverage-docker (gem)	15m 28s
coverage-docker (deno)	15m 28s
coverage-docker (composer)	6m 33s
coverage-docker (cargo)	6m 28s
coverage-docker (pypi)	6m 31s
coverage-docker (golang)	6m 1s
coverage-docker (nuget)	4m 34s
coverage-docker (maven)	15m 29s
e2e-docker	0s
coverage-merge	0s
e2e	1s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	1s
cargo old toolchains (manifest [patch])	1s
yarn-classic ${{ matrix.release }}	1s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	1s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	1s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	1s
e2e-full	1s
	6h 21m 42s