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Fix gem pair model ignoring custom lockfile and Bundler 1 twins (#749, #751) #2184

Job	Run time
release-readiness	7s
clippy	50s
node-addon	59s
dispatch-tests	14s
docker-base	5m 9s
test-release	11m 33s
lint-ecosystems	28s
test (windows-latest)	11m 29s
e2e-build (windows-latest)	4m 50s
e2e-build (macos-latest)	2m 49s
hosted-e2e	1m 33s
coverage	11m 34s
test (macos-latest)	1m 34s
e2e-build (ubuntu-latest)	5m 32s
coverage-docker (npm)	6m 30s
coverage-docker (pypi)	6m 36s
coverage-docker (gem)	6m 27s
coverage-docker (nuget)	6m 32s
coverage-docker (sbt)	6m 38s
coverage-docker (golang)	6m 21s
coverage-docker (cargo)	6m 34s
coverage-docker (composer)	6m 38s
coverage-docker (deno)	6m 34s
coverage-docker (maven)	6m 34s
e2e-docker	0s
yarn-classic ${{ matrix.release }}	1s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	1s
cargo old toolchains (manifest [patch])	1s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	1s
e2e	1s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	1s
e2e-full	1s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	1s
coverage-merge	1s
	2h 4m 14s