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Fix gem pair model ignoring custom lockfile and Bundler 1 twins (#749, #751) #2194

Job	Run time
release-readiness	8s
e2e-build (macos-latest)	3m 48s
e2e-build (ubuntu-latest)	4m 1s
test-release	4m 2s
coverage	4m 1s
clippy	1m 47s
dispatch-tests	10s
lint-ecosystems	29s
test (windows-latest)	3m 57s
test (macos-latest)	3m 48s
node-addon	1m 7s
e2e-build (windows-latest)	3m 58s
docker-base	3m 50s
hosted-e2e	1m 39s
coverage-docker	1s
e2e-docker	1s
e2e	1s
yarn-classic ${{ matrix.release }}	1s
cargo old toolchains (manifest [patch])	1s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	1s
e2e-full	1s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	1s
coverage-merge	1s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	1s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	1s
	36m 56s