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Fix 15 open pnpm issues across hosted, vendored and agent modes #2329

Job	Run time
dispatch-tests	16s
coverage	7m 47s
test (windows-latest)	8m 59s
docker-base	6m 27s
clippy	47s
node-addon	1m 7s
release-readiness	14s
e2e-build (ubuntu-latest)	3m 42s
test (macos-latest)	9m 3s
e2e-build (macos-latest)	9m 3s
lint-ecosystems	28s
e2e-build (windows-latest)	7m 39s
test-release	6m 31s
hosted-e2e	1m 24s
coverage-docker (cargo)	2m 52s
coverage-docker (golang)	2m 50s
coverage-docker (sbt)	2m 34s
coverage-docker (pypi)	2m 50s
coverage-docker (deno)	2m 49s
coverage-docker (maven)	2m 46s
coverage-docker (nuget)	2m 46s
coverage-docker (composer)	2m 49s
coverage-docker (gem)	2m 49s
e2e-docker	0s
coverage-docker (npm)	2m 48s
e2e	1s
yarn-classic ${{ matrix.release }}	1s
e2e-full	1s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	1s
coverage-merge	1s
ci-ok	3s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	1s
cargo old toolchains (manifest [patch])	1s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	1s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	1s
	1h 31m 32s