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Fix gem pair model ignoring custom lockfile and Bundler 1 twins (#749… #433

Job	Run time
image	14m 11s
sbt 1.13.0 e2e_sbt_vendor_build / macos-latest	6m 15s
sbt 1.13.0 e2e_sbt_build / windows-latest	11m 39s
sbt 1.13.0 e2e_sbt_vendor_build / windows-latest	7m 27s
linux-bins	3m 50s
sbt 1.13.0 e2e_sbt_build / macos-latest	7m 46s
scala-cli 1.17.1	2m 7s
mill 0.11.13	1m 58s
mill 0.12.17	1m 42s
mill 1.1.10	2m 31s
sbt 1.13.0 / jdk 17 / agent	1m 45s
sbt 0.13.18 / jdk 8 / agent	1m 15s
sbt 1.2.8 / jdk 8 / agent	1m 54s
sbt 1.13.0 / jdk 17 / vendored	4m 11s
sbt 1.3.13 / jdk 8 / agent	2m 57s
sbt 1.3.13 / jdk 8 / hosted	16m 50s
sbt 1.9.9 / jdk 17 / vendored	4m 32s
sbt 0.13.18 / jdk 8 / vendored	4m 57s
sbt 0.13.18 / jdk 8 / hosted	6m 15s
sbt 1.2.8 / jdk 8 / hosted	5m 57s
sbt 1.3.13 / jdk 8 / vendored	4m 35s
sbt 2.0.9 / jdk 21 / agent	2m 42s
sbt 1.13.0 / jdk 17 / hosted	7m 52s
sbt 1.13.0 / jdk 21 / hosted	7m 0s
sbt 1.13.0 / jdk 21 / vendored	5m 37s
sbt 2.0.9 / jdk 21 / vendored	5m 48s
sbt 2.0.9 / jdk 17 / vendored	6m 26s
sbt 1.9.9 / jdk 17 / agent	1m 50s
sbt 2.0.9 / jdk 21 / hosted	10m 35s
sbt 2.0.9 / jdk 17 / hosted	8m 27s
sbt 1.2.8 / jdk 8 / vendored	5m 41s
sbt 1.13.0 / jdk 21 / agent	2m 38s
sbt 2.0.9 / jdk 17 / agent	2m 52s
sbt 1.9.9 / jdk 17 / hosted	8m 5s
	3h 10m 7s