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Fix vendored revert reading a removed dependency as drift (#1132, #1140, #1142) #487

Job	Run time
linux-bins	3m 7s
sbt 1.13.0 e2e_sbt_vendor_build / windows-latest	6m 20s
image	18m 3s
sbt 1.13.0 e2e_sbt_build / windows-latest	12m 27s
mill 0.12.17	1m 41s
scala-cli 1.17.1	3m 3s
mill 1.1.10	3m 21s
mill 0.11.13	3m 14s
sbt 1.9.9 / jdk 17 / agent	2m 58s
sbt 1.13.0 / jdk 17 / agent	3m 12s
sbt 2.0.9 / jdk 17 / hosted	7m 49s
sbt 1.2.8 / jdk 8 / agent	1m 31s
sbt 1.3.13 / jdk 8 / hosted	7m 49s
sbt 0.13.18 / jdk 8 / agent	2m 46s
sbt 1.13.0 / jdk 17 / vendored	5m 47s
sbt 2.0.9 / jdk 17 / agent	1m 39s
sbt 1.3.13 / jdk 8 / agent	4m 26s
sbt 1.9.9 / jdk 17 / hosted	7m 51s
sbt 2.0.9 / jdk 17 / vendored	7m 47s
sbt 2.0.9 / jdk 21 / hosted	9m 35s
sbt 0.13.18 / jdk 8 / hosted	4m 50s
sbt 1.13.0 / jdk 17 / hosted	8m 6s
sbt 1.13.0 / jdk 21 / hosted	8m 8s
sbt 1.2.8 / jdk 8 / hosted	7m 21s
sbt 1.3.13 / jdk 8 / vendored	5m 40s
sbt 0.13.18 / jdk 8 / vendored	4m 0s
sbt 1.9.9 / jdk 17 / vendored	5m 34s
sbt 1.2.8 / jdk 8 / vendored	5m 2s
sbt 1.13.0 / jdk 21 / vendored	6m 48s
sbt 2.0.9 / jdk 21 / agent	2m 28s
sbt 2.0.9 / jdk 21 / vendored	7m 13s
sbt 1.13.0 / jdk 21 / agent	3m 45s
	3h 3m 21s