From 3437cac189099db170d9348300e9d6e581327b69 Mon Sep 17 00:00:00 2001 From: Coayala Date: Tue, 7 Apr 2026 11:29:22 -0700 Subject: [PATCH] fix use_* options --- subworkflows/local/db_search.nf | 2 ++ subworkflows/local/utils_nfcore_dram_pipeline/main.nf | 1 + workflows/dram.nf | 1 + 3 files changed, 4 insertions(+) diff --git a/subworkflows/local/db_search.nf b/subworkflows/local/db_search.nf index a4edfec6..8bf897d6 100644 --- a/subworkflows/local/db_search.nf +++ b/subworkflows/local/db_search.nf @@ -380,6 +380,8 @@ workflow DB_CHANNEL_SETUP { ch_kegg_db = Channel.empty() ch_kofam_db = Channel.empty() ch_dbcan_db = Channel.empty() + ch_dbcan3_db = Channel.empty() + ch_dbcan3_sub_db = Channel.empty() ch_camper_hmm_db = Channel.empty() ch_camper_mmseqs_db = Channel.empty() ch_camper_mmseqs_list = Channel.empty() diff --git a/subworkflows/local/utils_nfcore_dram_pipeline/main.nf b/subworkflows/local/utils_nfcore_dram_pipeline/main.nf index 58b86c77..a30a6ff8 100644 --- a/subworkflows/local/utils_nfcore_dram_pipeline/main.nf +++ b/subworkflows/local/utils_nfcore_dram_pipeline/main.nf @@ -62,6 +62,7 @@ workflow PIPELINE_INITIALISATION { use_fegenie = params.use_fegenie use_sulfur = params.use_sulfur use_pfam = params.use_pfam + use_kofam = params.use_kofam if (params.anno_dbs != "") { diff --git a/workflows/dram.nf b/workflows/dram.nf index 53481ba2..049a74a5 100644 --- a/workflows/dram.nf +++ b/workflows/dram.nf @@ -73,6 +73,7 @@ workflow DRAM { use_kegg = params.use_kegg use_kofam = params.use_kofam use_dbcan = params.use_dbcan + use_dbcan3 = params.use_dbcan3 use_camper = params.use_camper use_fegenie = params.use_fegenie use_methyl = params.use_methyl