diff --git a/src/EFCore/Metadata/Builders/EntityTypeBuilder.cs b/src/EFCore/Metadata/Builders/EntityTypeBuilder.cs
index 3a5f3b5826e..16d89c0f017 100644
--- a/src/EFCore/Metadata/Builders/EntityTypeBuilder.cs
+++ b/src/EFCore/Metadata/Builders/EntityTypeBuilder.cs
@@ -822,7 +822,7 @@ public virtual EntityTypeBuilder HasQueryFilter(LambdaExpression? filter)
     /// <returns>The same builder instance so that multiple configuration calls can be chained.</returns>
     public virtual EntityTypeBuilder HasQueryFilter(string filterKey, LambdaExpression? filter)
     {
-        Builder.HasQueryFilter(new QueryFilter(filterKey, filter));
+        Builder.HasQueryFilter(new QueryFilter(filterKey, filter, ConfigurationSource.Explicit));
 
         return this;
     }
diff --git a/src/EFCore/Metadata/Internal/QueryFilter.cs b/src/EFCore/Metadata/Internal/QueryFilter.cs
index 460e7065daf..1187c5983ef 100644
--- a/src/EFCore/Metadata/Internal/QueryFilter.cs
+++ b/src/EFCore/Metadata/Internal/QueryFilter.cs
@@ -8,7 +8,8 @@ namespace Microsoft.EntityFrameworkCore.Metadata.Internal;
 /// </summary>
 /// <param name="key">The key of the query filter.</param>
 /// <param name="expression">The expression representing the filter.</param>
-public class QueryFilter(string? key, LambdaExpression? expression) : IQueryFilter
+/// <param name="configurationSource">The configuration source of the query filter.</param>
+public class QueryFilter(string? key, LambdaExpression? expression, ConfigurationSource configurationSource) : IQueryFilter
 {
     /// <summary>
     ///     This is an internal API that supports the Entity Framework Core infrastructure and not subject to
@@ -32,7 +33,7 @@ public class QueryFilter(string? key, LambdaExpression? expression) : IQueryFilt
     ///     any release. You should only use it directly in your code with extreme caution and knowing that
     ///     doing so can result in application failures when updating to a new Entity Framework Core release.
     /// </summary>
-    public virtual ConfigurationSource? ConfigurationSource { get; set; }
+    public virtual ConfigurationSource ConfigurationSource { get; set; } = configurationSource;
 
     /// <summary>
     ///     This is an internal API that supports the Entity Framework Core infrastructure and not subject to
@@ -41,27 +42,7 @@ public class QueryFilter(string? key, LambdaExpression? expression) : IQueryFilt
     ///     doing so can result in application failures when updating to a new Entity Framework Core release.
     /// </summary>
     public QueryFilter(LambdaExpression? expression, ConfigurationSource configurationSource)
-        : this(null, expression)
-        => ConfigurationSource = configurationSource;
-
-    /// <summary>
-    ///     This is an internal API that supports the Entity Framework Core infrastructure and not subject to
-    ///     the same compatibility standards as public APIs. It may be changed or removed without notice in
-    ///     any release. You should only use it directly in your code with extreme caution and knowing that
-    ///     doing so can result in application failures when updating to a new Entity Framework Core release.
-    /// </summary>
-    public QueryFilter(string key, LambdaExpression? expression, ConfigurationSource configurationSource)
-        : this(key, expression)
-        => ConfigurationSource = configurationSource;
-
-    /// <summary>
-    ///     This is an internal API that supports the Entity Framework Core infrastructure and not subject to
-    ///     the same compatibility standards as public APIs. It may be changed or removed without notice in
-    ///     any release. You should only use it directly in your code with extreme caution and knowing that
-    ///     doing so can result in application failures when updating to a new Entity Framework Core release.
-    /// </summary>
-    public QueryFilter(LambdaExpression? expression)
-        : this(null, expression)
+        : this(null, expression, configurationSource)
     {
     }
 
@@ -72,10 +53,9 @@ public QueryFilter(LambdaExpression? expression)
     ///     doing so can result in application failures when updating to a new Entity Framework Core release.
     /// </summary>
     public QueryFilter(string key, LambdaExpression? expression, bool fromDataAnnotation)
-        : this(key, expression)
-        => ConfigurationSource = fromDataAnnotation
-            ? Metadata.ConfigurationSource.DataAnnotation
-            : Metadata.ConfigurationSource.Convention;
+        : this(key, expression, fromDataAnnotation ? Metadata.ConfigurationSource.DataAnnotation : Metadata.ConfigurationSource.Convention)
+    {
+    }
 
     /// <summary>
     ///     This is an internal API that supports the Entity Framework Core infrastructure and not subject to
@@ -84,8 +64,7 @@ public QueryFilter(string key, LambdaExpression? expression, bool fromDataAnnota
     ///     doing so can result in application failures when updating to a new Entity Framework Core release.
     /// </summary>
     public QueryFilter(LambdaExpression? expression, bool fromDataAnnotation)
-        : this(expression)
-        => ConfigurationSource = fromDataAnnotation
-            ? Metadata.ConfigurationSource.DataAnnotation
-            : Metadata.ConfigurationSource.Convention;
+        : this(null, expression, fromDataAnnotation ? Metadata.ConfigurationSource.DataAnnotation : Metadata.ConfigurationSource.Convention)
+    {
+    }
 }
diff --git a/test/EFCore.Tests/Metadata/Internal/InternalEntityTypeBuilderTest.cs b/test/EFCore.Tests/Metadata/Internal/InternalEntityTypeBuilderTest.cs
index d6ad38bd6e1..e96a0e82c7f 100644
--- a/test/EFCore.Tests/Metadata/Internal/InternalEntityTypeBuilderTest.cs
+++ b/test/EFCore.Tests/Metadata/Internal/InternalEntityTypeBuilderTest.cs
@@ -3392,6 +3392,31 @@ public void Can_replace_named_query_filter_only_with_lower_or_equal_source()
         Assert.NotEqual(filterExpression2, entityBuilder.Metadata.FindDeclaredQueryFilter(filterKey).Expression);
     }
 
+    [ConditionalFact]
+    public void Can_override_named_query_filter_from_convention_with_explicit_configuration()
+    {
+        // This test verifies that named query filters set by conventions can be overridden by explicit configuration
+        var modelBuilder = CreateModelBuilder();
+        var entityBuilder = modelBuilder.Entity(typeof(Order), ConfigurationSource.Explicit);
+
+        LambdaExpression conventionFilter = (Order o) => o.Id == 1;
+        LambdaExpression explicitFilter = (Order o) => o.Id == 2;
+        const string filterKey = "testFilter";
+
+        // Convention sets a named query filter
+        entityBuilder.HasQueryFilter(new QueryFilter(filterKey, conventionFilter, ConfigurationSource.Convention));
+        Assert.Same(conventionFilter, entityBuilder.Metadata.FindDeclaredQueryFilter(filterKey).Expression);
+        Assert.Equal(ConfigurationSource.Convention, entityBuilder.Metadata.GetQueryFilterConfigurationSource(filterKey));
+
+        // Public API should be able to override it
+        var publicBuilder = new EntityTypeBuilder(entityBuilder.Metadata);
+        publicBuilder.HasQueryFilter(filterKey, explicitFilter);
+        
+        // Verify the filter was replaced with the explicit one
+        Assert.Same(explicitFilter, entityBuilder.Metadata.FindDeclaredQueryFilter(filterKey).Expression);
+        Assert.Equal(ConfigurationSource.Explicit, entityBuilder.Metadata.GetQueryFilterConfigurationSource(filterKey));
+    }
+
     private static TestLogger<DbLoggerCategory.Model, TestLoggingDefinitions> CreateTestLogger()
         => new() { EnabledFor = LogLevel.Warning };