Hi, thank you for developing and maintaining FiberHMM.
I am encountering a segmentation fault when running fiberhmm-apply on a mapped file that includes nucleosome tags added with fibertools add-nucleosomes, along with m6A calls derived from PacBio data. The issue appears consistently with the mapped BAM files.
The segmentation fault does not occur when using the unmapped file, even though it still contains the nucleosome and m6A tags.
But, when I run fiberhmm-extract on the unmapped file with footprints, I get No footprint features found, skipping..
Please let me know if I need to modify anything and I am happy to provide more details.
Command : fiberhmm-apply -i fiberseq.mapped.bam --mode pacbio-fiber -m hia5_pacbio.json -o ./ -c 36
Thanks again for the tool and your support.
Hi, thank you for developing and maintaining FiberHMM.
I am encountering a segmentation fault when running
fiberhmm-applyon a mapped file that includes nucleosome tags added withfibertools add-nucleosomes, along with m6A calls derived from PacBio data. The issue appears consistently with the mapped BAM files.The segmentation fault does not occur when using the unmapped file, even though it still contains the nucleosome and m6A tags.
But, when I run fiberhmm-extract on the unmapped file with footprints, I get
No footprint features found, skipping..Please let me know if I need to modify anything and I am happy to provide more details.
Command :
fiberhmm-apply -i fiberseq.mapped.bam --mode pacbio-fiber -m hia5_pacbio.json -o ./ -c 36Thanks again for the tool and your support.