diff --git a/vcf/parser.py b/vcf/parser.py index c3c3d082..e454ea41 100644 --- a/vcf/parser.py +++ b/vcf/parser.py @@ -275,7 +275,7 @@ def __init__(self, fsock=None, filename=None, compressed=None, prepend_chr=False self._separator = '\t| +' self._row_pattern = re.compile(self._separator) - self._alt_pattern = re.compile('[\[\]]') + self._alt_pattern = re.compile(r'[\[\]]') self.reader = (line.strip() for line in self._reader if line.strip()) @@ -533,7 +533,7 @@ def _parse_alt(self, str): withinMainAssembly = True pos = remoteCoords[1] orientation = (str[0] == '[' or str[0] == ']') - remoteOrientation = (re.search('\[', str) is not None) + remoteOrientation = (re.search(r'\[', str) is not None) if orientation: connectingSequence = items[2] else: