Several scripts in this repo now have limited use or are deprecated:
fastx_subset.sh: can be done in a straightforward way using xargs/parallel and seqtk, so I think this script is no longer needed.predict_short_orfs.sh: now that FragGeneScanRS is available, I don't think this wrapper is needed anymore. The reformat logic is still kind of helpful but is really just a code snippet and might not need its own scriptcheck_md5_hashes.sh: I personally don't think I have used this script in years; is it really needed? A short for loop could be written whenever the need arises.
Might it be reasonable to remove these from the repo, for decluttering purposes?
Several scripts in this repo now have limited use or are deprecated:
fastx_subset.sh: can be done in a straightforward way using xargs/parallel and seqtk, so I think this script is no longer needed.predict_short_orfs.sh: now that FragGeneScanRS is available, I don't think this wrapper is needed anymore. Thereformatlogic is still kind of helpful but is really just a code snippet and might not need its own scriptcheck_md5_hashes.sh: I personally don't think I have used this script in years; is it really needed? A shortforloop could be written whenever the need arises.Might it be reasonable to remove these from the repo, for decluttering purposes?