From df281e03c0582cb444c408df8c212fc7142b75c6 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Joachim=20S=C3=B8dequist?= <139451906+joasode@users.noreply.github.com> Date: Tue, 8 Apr 2025 09:26:51 +0200 Subject: [PATCH 1/6] Update SCHED_docs_linkcheck.yml --- .github/workflows/SCHED_docs_linkcheck.yml | 2 -- 1 file changed, 2 deletions(-) diff --git a/.github/workflows/SCHED_docs_linkcheck.yml b/.github/workflows/SCHED_docs_linkcheck.yml index 5673b869..668e6ee0 100644 --- a/.github/workflows/SCHED_docs_linkcheck.yml +++ b/.github/workflows/SCHED_docs_linkcheck.yml @@ -3,8 +3,6 @@ on: pull_request: branches: - main - schedule: - - cron: '15 2 * * TUE' # every Tuesday night workflow_dispatch: # allow for manually trigging the workflow jobs: check-docs-links: From 8caa8907ef8627c6aa5113ec31345a873f7d62c2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Joachim=20S=C3=B8dequist?= <139451906+joasode@users.noreply.github.com> Date: Tue, 8 Apr 2025 09:27:06 +0200 Subject: [PATCH 2/6] Update CI_pull_request.yml --- .github/workflows/CI_pull_request.yml | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/.github/workflows/CI_pull_request.yml b/.github/workflows/CI_pull_request.yml index 311bd4d9..65d0c6e2 100644 --- a/.github/workflows/CI_pull_request.yml +++ b/.github/workflows/CI_pull_request.yml @@ -3,9 +3,7 @@ on: pull_request: branches: - main - schedule: - - cron: '15 2 * * TUE' # Also run the full test suite for PRs on the main branch every Tuesday night - workflow_dispatch: # allow for manually trigging the workflow + workflow_dispatch: # allow for manually trigging the workflow jobs: lint-and-format: name: Lint and check formatting From 9928f6fce88a5b79a99ad5980be7f8dc5e7cce40 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Joachim=20S=C3=B8dequist?= <139451906+joasode@users.noreply.github.com> Date: Tue, 8 Apr 2025 11:04:24 +0200 Subject: [PATCH 3/6] Add debug dump --- .github/workflows/CI_pull_request.yml | 35 +++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) diff --git a/.github/workflows/CI_pull_request.yml b/.github/workflows/CI_pull_request.yml index 65d0c6e2..e8846fab 100644 --- a/.github/workflows/CI_pull_request.yml +++ b/.github/workflows/CI_pull_request.yml @@ -5,6 +5,41 @@ on: - main workflow_dispatch: # allow for manually trigging the workflow jobs: + debug-dump: + runs-on: ubuntu-latest + steps: + - name: Dump GitHub context + env: + GITHUB_CONTEXT: ${{ toJson(github) }} + run: echo "$GITHUB_CONTEXT" + - name: Dump job context + env: + JOB_CONTEXT: ${{ toJson(job) }} + run: echo "$JOB_CONTEXT" + - name: Dump steps context + env: + STEPS_CONTEXT: ${{ toJson(steps) }} + run: echo "$STEPS_CONTEXT" + - name: Dump runner context + env: + RUNNER_CONTEXT: ${{ toJson(runner) }} + run: echo "$RUNNER_CONTEXT" + - name: Dump strategy context + env: + STRATEGY_CONTEXT: ${{ toJson(strategy) }} + run: echo "$STRATEGY_CONTEXT" + - name: Dump matrix context + env: + MATRIX_CONTEXT: ${{ toJson(matrix) }} + run: echo "$MATRIX_CONTEXT" + + - name: Show default environment variables + run: | + echo "The job_id is: $GITHUB_JOB" # reference the default environment variables + echo "The id of this action is: $GITHUB_ACTION" # reference the default environment variables + echo "The run id is: $GITHUB_RUN_ID" + echo "The GitHub Actor's username is: $GITHUB_ACTOR" + echo "GitHub SHA: $GITHUB_SHA" lint-and-format: name: Lint and check formatting runs-on: ubuntu-latest From 6773f3d32401d3dc6987264ad03066647da84ef4 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Joachim=20S=C3=B8dequist?= <139451906+joasode@users.noreply.github.com> Date: Tue, 8 Apr 2025 11:05:26 +0200 Subject: [PATCH 4/6] Add debug dump to CI push --- .github/workflows/CI_push.yml | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) diff --git a/.github/workflows/CI_push.yml b/.github/workflows/CI_push.yml index da312d13..288fff07 100644 --- a/.github/workflows/CI_push.yml +++ b/.github/workflows/CI_push.yml @@ -6,6 +6,41 @@ on: tags-ignore: - "**" jobs: + debug-dump: + runs-on: ubuntu-latest + steps: + - name: Dump GitHub context + env: + GITHUB_CONTEXT: ${{ toJson(github) }} + run: echo "$GITHUB_CONTEXT" + - name: Dump job context + env: + JOB_CONTEXT: ${{ toJson(job) }} + run: echo "$JOB_CONTEXT" + - name: Dump steps context + env: + STEPS_CONTEXT: ${{ toJson(steps) }} + run: echo "$STEPS_CONTEXT" + - name: Dump runner context + env: + RUNNER_CONTEXT: ${{ toJson(runner) }} + run: echo "$RUNNER_CONTEXT" + - name: Dump strategy context + env: + STRATEGY_CONTEXT: ${{ toJson(strategy) }} + run: echo "$STRATEGY_CONTEXT" + - name: Dump matrix context + env: + MATRIX_CONTEXT: ${{ toJson(matrix) }} + run: echo "$MATRIX_CONTEXT" + + - name: Show default environment variables + run: | + echo "The job_id is: $GITHUB_JOB" # reference the default environment variables + echo "The id of this action is: $GITHUB_ACTION" # reference the default environment variables + echo "The run id is: $GITHUB_RUN_ID" + echo "The GitHub Actor's username is: $GITHUB_ACTOR" + echo "GitHub SHA: $GITHUB_SHA" lint-and-format: name: Lint and check formatting runs-on: ubuntu-latest From 266ac6d5a5a0b1b9a73c3f7c030731d3496d24cc Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Joachim=20S=C3=B8dequist?= <139451906+joasode@users.noreply.github.com> Date: Tue, 8 Apr 2025 11:07:48 +0200 Subject: [PATCH 5/6] Update container.py --- cotainr/container.py | 1 + 1 file changed, 1 insertion(+) diff --git a/cotainr/container.py b/cotainr/container.py index 00410ae9..5c349d36 100644 --- a/cotainr/container.py +++ b/cotainr/container.py @@ -64,6 +64,7 @@ class SingularitySandbox: def __init__(self, *, base_image, log_settings=None): """Construct the SingularitySandbox context manager.""" + print('test') self.base_image = base_image self.sandbox_dir = None self.architecture = None From fc813d5f8a7097620ba5f6bad3791ccaae31b915 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Joachim=20S=C3=B8dequist?= <139451906+joasode@users.noreply.github.com> Date: Tue, 8 Apr 2025 11:24:36 +0200 Subject: [PATCH 6/6] Add workflow_dispatch in CI_push.yml in CI-debug branch --- .github/workflows/CI_push.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.github/workflows/CI_push.yml b/.github/workflows/CI_push.yml index 288fff07..2dffaba9 100644 --- a/.github/workflows/CI_push.yml +++ b/.github/workflows/CI_push.yml @@ -5,6 +5,8 @@ on: - "**" tags-ignore: - "**" + workflow_dispatch: + jobs: debug-dump: runs-on: ubuntu-latest