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Add Zarr writer#151

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Guilherme Penedo (guipenedo) wants to merge 22 commits into
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codex/zarr-writer
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Add Zarr writer#151
Guilherme Penedo (guipenedo) wants to merge 22 commits into
mainfrom
codex/zarr-writer

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Summary

  • add write_zarr pipeline API and ZarrSink
  • concatenate selected per-episode arrays into Zarr datasets
  • write cumulative episode ends for row reconstruction

Testing

  • uv run ruff check src/refiner/pipeline/sinks/zarr.py src/refiner/pipeline/sinks/init.py src/refiner/pipeline/pipeline.py tests/readers/test_zarr_reader.py
  • uv run ty check src/refiner/pipeline/sinks/zarr.py src/refiner/pipeline/sinks/init.py src/refiner/pipeline/pipeline.py tests/readers/test_zarr_reader.py
  • uv run pytest tests/readers/test_zarr_reader.py tests/pipeline/test_lerobot_sink.py -q

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Code Review

This pull request introduces a ZarrSink and a corresponding write_zarr method to the pipeline, enabling data export to the Zarr format. The implementation includes logic for handling robotics-specific data structures and calculating episode ends. However, the review identified several significant concerns: the sink currently accumulates all data in memory which poses a high risk of out-of-memory errors, the logic for inferring arrays and handling missing values could lead to dataset misalignment, and the file-writing mode in the close method is not safe for distributed execution. Additionally, a performance improvement was suggested to use more direct Arrow-to-Numpy conversions.

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Comment thread src/refiner/pipeline/sinks/zarr.py Outdated
Comment thread src/refiner/pipeline/sinks/reducer/file.py Outdated
@guipenedo Guilherme Penedo (guipenedo) force-pushed the codex/zarr-writer branch 3 times, most recently from e2d59dc to c2c8e25 Compare May 23, 2026 12:16
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Comment thread src/refiner/pipeline/sinks/zarr.py Outdated
@guipenedo Guilherme Penedo (guipenedo) force-pushed the codex/zarr-reader-writer branch 2 times, most recently from b2b498e to 89a865b Compare May 23, 2026 21:07
Base automatically changed from codex/zarr-reader-writer to main May 23, 2026 22:55
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