diff --git a/src/Console/Command/CustomRuleCommand.php b/src/Console/Command/CustomRuleCommand.php
deleted file mode 100644
index af97edcce63..00000000000
--- a/src/Console/Command/CustomRuleCommand.php
+++ /dev/null
@@ -1,34 +0,0 @@
-<?php
-
-declare(strict_types=1);
-
-namespace Rector\Console\Command;
-
-use Symfony\Component\Console\Command\Command;
-use Symfony\Component\Console\Input\InputInterface;
-use Symfony\Component\Console\Output\OutputInterface;
-use Symfony\Component\Console\Style\SymfonyStyle;
-
-final class CustomRuleCommand extends Command
-{
-    public function __construct(
-        private readonly SymfonyStyle $symfonyStyle
-    ) {
-        parent::__construct();
-    }
-
-    protected function configure(): void
-    {
-        $this->setName('custom-rule');
-        $this->setDescription('[DEPRECATED] Create base of local custom rule with tests');
-    }
-
-    protected function execute(InputInterface $input, OutputInterface $output): int
-    {
-        $this->symfonyStyle->error(
-            'The "custom-rule" command is deprecated and no longer generates files. Use an AI agent to scaffold a custom rule instead - it handles the setup faster and with less guesswork.'
-        );
-
-        return Command::FAILURE;
-    }
-}
diff --git a/src/Console/Command/SetupCICommand.php b/src/Console/Command/SetupCICommand.php
deleted file mode 100644
index 38d5bc85db5..00000000000
--- a/src/Console/Command/SetupCICommand.php
+++ /dev/null
@@ -1,34 +0,0 @@
-<?php
-
-declare(strict_types=1);
-
-namespace Rector\Console\Command;
-
-use Symfony\Component\Console\Command\Command;
-use Symfony\Component\Console\Input\InputInterface;
-use Symfony\Component\Console\Output\OutputInterface;
-use Symfony\Component\Console\Style\SymfonyStyle;
-
-final class SetupCICommand extends Command
-{
-    public function __construct(
-        private readonly SymfonyStyle $symfonyStyle
-    ) {
-        parent::__construct();
-    }
-
-    protected function configure(): void
-    {
-        $this->setName('setup-ci');
-        $this->setDescription('[DEPRECATED] Add CI workflow to let Rector work for you');
-    }
-
-    protected function execute(InputInterface $input, OutputInterface $output): int
-    {
-        $this->symfonyStyle->error(
-            'The "setup-ci" command is deprecated and no longer generates files. Its generic template lacked caching and did not fit most setups. Add a CI workflow explicitly for your use case instead - an AI agent can tailor one to your repository.'
-        );
-
-        return Command::FAILURE;
-    }
-}
diff --git a/src/DependencyInjection/LazyContainerFactory.php b/src/DependencyInjection/LazyContainerFactory.php
index efeee525f90..03754e3ae41 100644
--- a/src/DependencyInjection/LazyContainerFactory.php
+++ b/src/DependencyInjection/LazyContainerFactory.php
@@ -35,10 +35,8 @@
 use Rector\Configuration\ConfigurationRuleFilter;
 use Rector\Configuration\RenamedClassesDataCollector;
 use Rector\Console\Command\ComposerBasedCommand;
-use Rector\Console\Command\CustomRuleCommand;
 use Rector\Console\Command\ListRulesCommand;
 use Rector\Console\Command\ProcessCommand;
-use Rector\Console\Command\SetupCICommand;
 use Rector\Console\Command\ValidateConfigCommand;
 use Rector\Console\Command\WorkerCommand;
 use Rector\Console\ConsoleApplication;
@@ -159,10 +157,8 @@ private function registerConsole(RectorConfig $rectorConfig): void
         $rectorConfig->singleton(ProcessCommand::class);
         $rectorConfig->singleton(WorkerCommand::class);
         $rectorConfig->singleton(ValidateConfigCommand::class);
-        $rectorConfig->singleton(SetupCICommand::class);
         $rectorConfig->singleton(AllRectorRulesProvider::class);
         $rectorConfig->singleton(ListRulesCommand::class);
-        $rectorConfig->singleton(CustomRuleCommand::class);
         $rectorConfig->singleton(ComposerBasedCommand::class);
 
     }