From fd795b6421fd2f91d1c411447a695c6f81e92e4c Mon Sep 17 00:00:00 2001
From: "scverse-pr-creator[bot]"
 <272303624+scverse-pr-creator[bot]@users.noreply.github.com>
Date: Mon, 6 Apr 2026 17:55:34 +0000
Subject: [PATCH 1/2] Update instance repo from cookiecutter template

---
 .cruft.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.cruft.json b/.cruft.json
index c327085..0eae93e 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,6 +1,6 @@
 {
   "template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-  "commit": "fb52a58935c87d1289c43822fe0814abe56c9071",
+  "commit": "15f1068fdea7e7c6f42b5077312d6a317a780727",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -36,7 +36,7 @@
         "trim_blocks": true
       },
       "_template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-      "_commit": "fb52a58935c87d1289c43822fe0814abe56c9071"
+      "_commit": "15f1068fdea7e7c6f42b5077312d6a317a780727"
     }
   },
   "directory": null

From 4928d70d2f14aab50b23b268540abcf0020c8acd Mon Sep 17 00:00:00 2001
From: "scverse-pr-creator[bot]"
 <272303624+scverse-pr-creator[bot]@users.noreply.github.com>
Date: Mon, 6 Apr 2026 17:57:07 +0000
Subject: [PATCH 2/2] Update instance repo from cookiecutter template

---
 .cruft.json             | 4 ++--
 .pre-commit-config.yaml | 6 +++---
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/.cruft.json b/.cruft.json
index 0eae93e..8564f57 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,6 +1,6 @@
 {
   "template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-  "commit": "15f1068fdea7e7c6f42b5077312d6a317a780727",
+  "commit": "bbeefa8a3730394de7b4c67fde8cfbe477316166",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -36,7 +36,7 @@
         "trim_blocks": true
       },
       "_template": "/home/runner/work/cookiecutter-scverse/cookiecutter-scverse",
-      "_commit": "15f1068fdea7e7c6f42b5077312d6a317a780727"
+      "_commit": "bbeefa8a3730394de7b4c67fde8cfbe477316166"
     }
   },
   "directory": null
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 118cb1b..401c82b 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -7,16 +7,16 @@ default_stages:
 minimum_pre_commit_version: 2.16.0
 repos:
   - repo: https://github.com/biomejs/pre-commit
-    rev: v2.4.9
+    rev: v2.4.10
     hooks:
       - id: biome-format
         exclude: ^\.cruft\.json$ # inconsistent indentation with cruft - file never to be modified manually.
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: v2.20.0
+    rev: v2.21.0
     hooks:
       - id: pyproject-fmt
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.8
+    rev: v0.15.9
     hooks:
       - id: ruff-check
         types_or: [python, pyi, jupyter]