From 877bc6d516e54ac03f73eb4522283f2b4d8f638f Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Fri, 7 Aug 2026 22:23:59 +0000
Subject: [PATCH] chore(deps): bump noodles from 0.113.0 to 0.115.0

Bumps [noodles](https://github.com/zaeleus/noodles) from 0.113.0 to 0.115.0.
- [Commits](https://github.com/zaeleus/noodles/compare/noodles-0.113.0...noodles-0.115.0)

---
updated-dependencies:
- dependency-name: noodles
  dependency-version: 0.115.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Cargo.lock | 38 +++++++++++++++++++++++++-------------
 Cargo.toml |  2 +-
 2 files changed, 26 insertions(+), 14 deletions(-)

diff --git a/Cargo.lock b/Cargo.lock
index 9f77c86..225c929 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -693,26 +693,26 @@ dependencies = [
 
 [[package]]
 name = "noodles"
-version = "0.113.0"
+version = "0.115.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "03f0a067d8afc481ba06abe5bd924e89368932d664bea15d671bee3559728421"
+checksum = "5ef86cb036ab589c660e76bc6d7741454fe8ff71ba3348f71812936f5c1a43f6"
 dependencies = [
  "noodles-bam",
- "noodles-bgzf",
+ "noodles-bgzf 0.51.0",
  "noodles-fastq",
  "noodles-sam",
 ]
 
 [[package]]
 name = "noodles-bam"
-version = "0.92.0"
+version = "0.94.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6e70c87dfebe1800c6a59f1b4fc9e6d69e165876c2d475b2b684862a06225a70"
+checksum = "e018289a9da86771349be387224f6634ad56ec48eb16a3a29a7670def5d206c2"
 dependencies = [
  "bstr",
  "indexmap",
  "memchr",
- "noodles-bgzf",
+ "noodles-bgzf 0.51.0",
  "noodles-core",
  "noodles-csi",
  "noodles-sam",
@@ -731,6 +731,18 @@ dependencies = [
  "zlib-rs",
 ]
 
+[[package]]
+name = "noodles-bgzf"
+version = "0.51.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "280d401d0358893ad706fb6094a18e7f9e8f3002630f4960889cb702b6e2714e"
+dependencies = [
+ "bytes",
+ "crossbeam-channel",
+ "rayon",
+ "zlib-rs",
+]
+
 [[package]]
 name = "noodles-core"
 version = "0.20.0"
@@ -742,14 +754,14 @@ dependencies = [
 
 [[package]]
 name = "noodles-csi"
-version = "0.58.0"
+version = "0.60.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b522467eb7ae4a226b05182069e895940beda9206a3f4da9dd9395613ec9e5a8"
+checksum = "32789eeba9c4001d50de853a4c6a8f0551d586a91d6919c0008dd462231feacb"
 dependencies = [
  "bit-vec",
  "bstr",
  "indexmap",
- "noodles-bgzf",
+ "noodles-bgzf 0.51.0",
  "noodles-core",
 ]
 
@@ -765,16 +777,16 @@ dependencies = [
 
 [[package]]
 name = "noodles-sam"
-version = "0.87.0"
+version = "0.89.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "db484fde243408e8713278e6e83dbd67765cbd33612f2383f29b6359059d023f"
+checksum = "8063dd9e92825db46ae21813525589d41cff9ce2dcb2a0d25d99af86b274a1c5"
 dependencies = [
  "bitflags",
  "bstr",
  "indexmap",
  "lexical-core",
  "memchr",
- "noodles-bgzf",
+ "noodles-bgzf 0.51.0",
  "noodles-core",
  "noodles-csi",
 ]
@@ -986,7 +998,7 @@ dependencies = [
  "memmap2",
  "mimalloc",
  "noodles",
- "noodles-bgzf",
+ "noodles-bgzf 0.49.0",
  "predicates",
  "rayon",
  "rustc-hash",
diff --git a/Cargo.toml b/Cargo.toml
index 8a4638f..fb3893a 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -33,7 +33,7 @@ log = "0.4"
 env_logger = "0.11"
 memmap2 = "0.9"
 byteorder = "1"
-noodles = { version = "0.113", features = ["fastq", "sam", "bam", "bgzf"] }
+noodles = { version = "0.115", features = ["fastq", "sam", "bam", "bgzf"] }
 bstr = "1"
 # Use the pure-Rust `zlib-rs` backend instead of flate2's default `miniz_oxide`:
 # ~2-3x faster inflate/deflate on the FASTQ decode + BGZF (BAM) paths, with no C