Issues

• type_name_as_string_test fails

  bug
  seqan/seqan3#3416 · Filter by author yurivict opened on Apr 14, 2026
  2

  

• Rare memory management failures in FM-index in multi-threadding context

  bug
  seqan/seqan3#3389 · Filter by author behrj opened on Nov 7, 2025
  5

  

• Running sequence alignment with alphabets with more than 256 characters

  question
  seqan/seqan3#3341 · Filter by author andrestiraboschieclypsium opened on Feb 19, 2025
  3

• Problem with installation on mac os x

  question
  seqan/seqan3#3286 · Filter by author mkazanov opened on Sep 6, 2024
  5

  

• Improve SAM tag handling

  feature/proposal
  seqan/seqan3#3283 · Filter by author eseiler opened on Aug 12, 2024

• Score prealigned sequences

  question
  seqan/seqan3#3282 · Filter by author tkramer-motion opened on Aug 9, 2024

• Multi-threading, banding, other speed-ups

  question
  seqan/seqan3#3255 · Filter by author jaysunl opened on May 19, 2024
  3

• appending records to a .bam

  question
  seqan/seqan3#3250 · Filter by author notestaff opened on Mar 5, 2024
  1

• single-thread mode

  feature/proposalquestion
  seqan/seqan3#3239 · Filter by author notestaff opened on Feb 23, 2024
  4

• creating SAM file headers

  documentationfeature/proposal
  seqan/seqan3#3235 · Filter by author notestaff opened on Feb 16, 2024
  1

• Convert vertor<dna5> to std:string

  question
  seqan/seqan3#3218 · Filter by author nhhaidee opened on Dec 17, 2023
  1

• output_sequence1_id and output_sequence2_id are same

  bug
  seqan/seqan3#3205 · Filter by author JappyPing opened on Nov 8, 2023
  4

  

• alignment slice positions

  question
  seqan/seqan3#3203 · Filter by author notestaff opened on Nov 1, 2023
  1

• several same-score pairwise alignments

  question
  seqan/seqan3#3198 · Filter by author notestaff opened on Oct 11, 2023
  6

• Tests fail to compile

  bugresponse needed
  seqan/seqan3#3191 · Filter by author yurivict opened on Sep 10, 2023
  2

• Use OS/system packaged sdsl library

  question
  seqan/seqan3#3162 · Filter by author kbipinkumar opened on Jul 2, 2023
  10

• [Alignment] Is there a way to run align_pairwise without traceback?

  question
  seqan/seqan3#3045 · Filter by author leannmlindsey opened on Aug 12, 2022
  3

• [IO] BAM index support

  feature/proposal
  seqan/seqan3#2985 · Filter by author jay-tux opened on May 21, 2022
  6

• [IO] VCF/BCF support

  question
  seqan/seqan3#2953 · Filter by author cauliyang opened on Mar 26, 2022
  2

• [Alphabet] seqan3::concatenated_sequences benchmark

  ready to tackle
  seqan/seqan3#2951 · Filter by author smehringer opened on Mar 21, 2022
  7

  

• [Search] Query the text size

  feature/proposal
  seqan/seqan3#2934 · Filter by author joergi-w opened on Jan 26, 2022
  1

• [IO] Access list of file extensions of seqan3 I/O input classes

  feature/proposal
  seqan/seqan3#2927 · Filter by author Irallia opened on Jan 10, 2022
  1

• [Search] XOR Filters

  feature/proposal
  seqan/seqan3#2925 · Filter by author JensUweUlrich opened on Jan 7, 2022
  11

• [IO] Parsing for genome alignment formats (MAF and HAL)

  feature/proposal
  seqan/seqan3#2903 · Filter by author bkille opened on Nov 25, 2021
  6

• [Search] Shapes are the wrong way around

  question
  seqan/seqan3#2832 · Filter by author MitraDarja opened on Sep 24, 2021
  8