Consolidate Setup Tool, Configuration Tool, and Preloaded Tree Creation

[CarolineDenis]

Goal
Unify the setup flow, configuration tooling, and tree creation (preloaded or empty) into a single pr.

1. Setup Flow
Setup Forms

• All setup forms must display correctly in both light mode and dark mode (based on system settings).
• Users can only progress to the next form once all required fields are completed.
• User selections must be reflected in the Overview sidebar in real time.
• The setup flow must be submittable at the end.
• Users must be able to log into the database after setup completes.

Default Data & Configuration

• Default schema configuration captions and descriptions must be populated (not blank).
• Default picklists must be created correctly.
  • Note: The Agent Type picklist does not exist in the schema config, this is expected.
• Default preparation types must be created correctly.
• All tree viewer pages must load without errors.
• The admin user’s agent must be created correctly and must always include a last name.
• An empty Global Preferences file must be created in App Resources.

Known Issue (Out of Scope):
The Accounts page and Stats page currently throw errors. These will be addressed separately in
Check default database constraint differences between Sp6 and Sp7 (#7551).

2. Tree Configuration During Setup
Storage Tree

• Users must be able to modify the storage tree configuration during setup.
• Changes must be correctly reflected in the application after setup.

Geography Tree

• Users must be able to modify the geography tree configuration during setup.
• Both options must work:
  Preloaded tree
  Empty tree

Taxon Tree

• Users must be able to select a preloaded default tree when one exists.
• The selected tree must be correctly preloaded and visible when the app opens.

Geology Discipline

• Relevant tectonic and chronostratigraphic (chrono) trees must be created automatically.

3. Tree Viewer: Preloaded & Empty Trees

• Users can create an empty tree from the tree viewer.
• Users can modify rank configuration in the tree viewer.
• Users can create a preloaded tree from the tree viewer.
• Empty trees now have an upload button. The Upload Tree icon under root creation must work as expected.
• Users can delete a rank with no associated nodes.
• If ranks are deleted and a tree is then loaded, the tree configuration must be respected.
• Users receive notifications for:
  Tree creation start
  Successful completion
  Errors or cancellation

4. Configuration Tool
Institution Tree Viewer

• Users can click and drag to view all nodes in the institution tree.
• Clicking a resource node opens the resource form.
• Users can:
  • Edit a resource
  • Create new resources
  • Delete collections (created in 7)
• Users can collapse and expand sections in the left panel.
• Users can switch between vertical and horizontal views in the institution tree viewer.