diff --git a/DESCRIPTION b/DESCRIPTION index 18d83e7..27086f0 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -31,7 +31,7 @@ Imports: Suggests: bayesplot (>= 1.16.0), brms (>= 2.23.0), - cmdstanr (>= 0.8.1), + cmdstanr (>= 0.9.0), iwmm (>= 0.0.1), nimble (>= 1.4.3), philentropy (>= 0.10.0), @@ -48,7 +48,7 @@ VignetteBuilder: quarto Additional_repositories: https://topipa.r-universe.dev, https://stan-dev.r-universe.dev -URL: https://mc-stan.org/priorsense/ +URL: https://mc-stan.org/priorsense/, https://discourse.mc-stan.org/ BugReports: https://github.com/stan-dev/priorsense/issues Config/Needs/website: quarto Config/roxygen2/version: 8.1.0 diff --git a/data-raw/fit_univariate_normal_nimble.R b/data-raw/fit_univariate_normal_nimble.R index af2a608..23c02f0 100644 --- a/data-raw/fit_univariate_normal_nimble.R +++ b/data-raw/fit_univariate_normal_nimble.R @@ -36,7 +36,7 @@ fit <- runMCMC( niter = 20000, nburnin = 5000, nchains = 4, - thin = 5, + thin = 15, setSeed = c(123, 456, 789, 101112), samplesAsCodaMCMC = FALSE ) diff --git a/inst/extdata/univariate_normal_nimble.RDS b/inst/extdata/univariate_normal_nimble.RDS index 1504e21..50ecb12 100644 Binary files a/inst/extdata/univariate_normal_nimble.RDS and b/inst/extdata/univariate_normal_nimble.RDS differ diff --git a/vignettes/priorsense_with_nimble.qmd b/vignettes/priorsense_with_nimble.qmd index cae9423..8d3e49e 100644 --- a/vignettes/priorsense_with_nimble.qmd +++ b/vignettes/priorsense_with_nimble.qmd @@ -18,10 +18,17 @@ options(priorsense.plot_help_text = FALSE) ```{r} #| message: false #| warning: false +#| eval: false library(nimble) library(priorsense) ``` +```{r} +#| message: false +#| warnings: false +#| echo: false +library(priorsense) +``` `priorsense` is compatible with models fit with `nimble` @@ -48,6 +55,7 @@ Instantiate and compile the model as usual. #| message: false #| warning: false #| results: false +#| eval: false inits <- list( mu = 0, @@ -102,7 +110,7 @@ fit <- runMCMC( niter = 20000, nburnin = 5000, nchains = 4, - thin = 5, + thin = 15, setSeed = c(123, 456, 789, 101112), samplesAsCodaMCMC = TRUE # alternatively, coerce the output using `posterior::as_draws_df` )