diff --git a/Dockerfile b/Dockerfile
index 6da91d6..7efd731 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,10 +1,10 @@
-FROM alpine:3.21.2
+FROM alpine:3.21.3
 
 RUN apk update && apk --no-cache add bash curl git
 
 SHELL ["/bin/bash", "-o", "pipefail", "-c"]
 
-ARG KUSTOMIZE=5.4.3
+ARG KUSTOMIZE=5.6.0
 RUN curl -sL https://github.com/kubernetes-sigs/kustomize/releases/download/kustomize%2Fv${KUSTOMIZE}/kustomize_v${KUSTOMIZE}_linux_amd64.tar.gz | \
 tar xz && mv kustomize /usr/local/bin/kustomize
 
diff --git a/Makefile b/Makefile
index 912b493..5cd38bb 100644
--- a/Makefile
+++ b/Makefile
@@ -16,4 +16,4 @@ build:
 	docker buildx build --build-arg BUILDPLATFORM=$(BUILDPLATFORM) --build-arg TARGETARCH=$(GOARCH) -t local/$(PROJNAME) .
 
 scan: build
-	trivy --light -s "UNKNOWN,MEDIUM,HIGH,CRITICAL" --exit-code 1 local/$(PROJNAME)
+	trivy image -s "UNKNOWN,MEDIUM,HIGH,CRITICAL" --exit-code 1 local/$(PROJNAME)
diff --git a/README.md b/README.md
index 1e05108..969635d 100644
--- a/README.md
+++ b/README.md
@@ -13,7 +13,8 @@ Managing Kubernetes configurations across multiple environments and PRs can be c
 ## Features
 
 - Automatically builds Kustomize configurations from both PR branches
-- Generates a diff between base and head configurations
+- Generates a diff showing what would actually change upon merge (not just differences between branches)
+- Intelligently handles parallel changes to base and feature branches
 - Configurable root directory and search depth for Kustomize files
 - Commits must meet [Conventional Commits](https://www.conventionalcommits.org/en/v1.0.0/)
   - Automated with GitHub Actions ([commit-lint](https://github.com/conventional-changelog/commitlint/#what-is-commitlint))
@@ -22,6 +23,16 @@ Managing Kubernetes configurations across multiple environments and PRs can be c
 - Commits must be signed with [Developer Certificate of Origin (DCO)](https://developercertificate.org/)
   - Automated with GitHub App ([DCO](https://github.com/apps/dco))
 
+## How It Works
+Unlike simple diff tools, this action:
+
+1. Builds Kustomize output from the base branch
+1. Creates a temporary merge of the head branch into base (simulating the actual PR merge)
+1. Builds Kustomize output from the merged state
+1. Compares these outputs to show exactly what would change after merging
+
+This approach correctly handles cases where changes have been made to the base branch in parallel to the feature branch, avoiding misleading diffs that incorrectly suggest changes would be reverted.
+
 ## Inputs
 
 | Name | Description | Required | Default |
diff --git a/kustdiff b/kustdiff
index 0ff25ef..c659440 100755
--- a/kustdiff
+++ b/kustdiff
@@ -39,23 +39,22 @@ function safe_filename() {
   echo "$1" | sed 's/[^a-zA-Z0-9.]/_/g'
 }
 
-function build {
+function build_ref {
   local ref="$1"
-  local safe_ref=$(safe_filename "$ref")
+  local output_dir="$2"
   echo "Checking out ref: $ref"
   git checkout "$ref" --quiet
-  mkdir -p "$TMP_DIR/$safe_ref"
+  mkdir -p "$output_dir"
   for envpath in $(get_targets); do
     local relative_path="${envpath#$ROOT_DIR/}"
     local safe_path=$(safe_filename "$relative_path")
-    local output_file="$TMP_DIR/$safe_ref/${safe_path}.yaml"
+    local output_file="$output_dir/${safe_path}.yaml"
     echo "Running kustomize for $envpath"
     kustomize build "$envpath" -o "$output_file"
 
-#    debug_log "Contents of $output_file:"
-#    debug_log "$(cat "$output_file")"
-#    debug_log "End of $output_file"
-#    debug_log "------------------------------------"
+    if [ "$DEBUG" = "true" ]; then
+      debug_log "Built kustomize for $envpath to $output_file"
+    fi
   done
 }
 
@@ -64,30 +63,99 @@ function main {
   validate_root_dir
   validate_max_depth
 
-  git config --global --add safe.directory "$GITHUB_WORKSPACE"
-  local diff escaped_output output
-  build "$INPUT_HEAD_REF"
-  build "$INPUT_BASE_REF"
+  # Set up git identity for merge operations
+  git config --global user.email "github-actions@github.com" || true
+  git config --global user.name "GitHub Actions" || true
+
+  git config --global --add safe.directory "$GITHUB_WORKSPACE" || true
+
+  # Save current state to restore later
+  local current_branch
+  current_branch=$(git rev-parse --abbrev-ref HEAD || echo "detached")
+
+  # Check if the branch exists locally or as a remote reference
+  function resolve_branch_ref() {
+    local branch_name="$1"
+
+    # First check if it's a local branch
+    if git show-ref --verify --quiet "refs/heads/$branch_name"; then
+      echo "$branch_name"
+      return 0
+    fi
+
+    # Next check if it's a remote branch
+    if git show-ref --verify --quiet "refs/remotes/origin/$branch_name"; then
+      echo "origin/$branch_name"
+      return 0
+    fi
+
+    # Finally check if it's a valid commit SHA
+    if git cat-file -e "$branch_name^{commit}" 2>/dev/null; then
+      echo "$branch_name"
+      return 0
+    fi
+
+    # If we get here, we couldn't resolve the reference
+    echo "Error: Could not resolve reference: $branch_name"
+    return 1
+  }
+
+  # Resolve the BASE and HEAD references
+  local base_ref_resolved
+  base_ref_resolved=$(resolve_branch_ref "$INPUT_BASE_REF") || exit 1
+  debug_log "Resolved base reference: $base_ref_resolved (from $INPUT_BASE_REF)"
+
+  # Build BASE output
+  local safe_base_ref=$(safe_filename "$INPUT_BASE_REF")
+  local base_output_dir="$TMP_DIR/base"
+  build_ref "$base_ref_resolved" "$base_output_dir"
+
+  # Resolve HEAD reference
+  local head_ref_resolved
+  head_ref_resolved=$(resolve_branch_ref "$INPUT_HEAD_REF") || exit 1
+  debug_log "Resolved head reference: $head_ref_resolved (from $INPUT_HEAD_REF)"
+
+  # Create a temporary merge branch
+  local merge_branch="temp-merge-$RANDOM"
+  git checkout -b "$merge_branch" "$base_ref_resolved" --quiet
+
+  debug_log "Creating temporary merge of $head_ref_resolved into $base_ref_resolved (via $merge_branch)"
+
+  # Attempt to merge HEAD into BASE
+  if ! git merge "$head_ref_resolved" --quiet; then
+    echo "Merge conflict detected. Cannot automatically merge $INPUT_HEAD_REF into $INPUT_BASE_REF."
+    git merge --abort || true
+    git checkout "$current_branch" --quiet || git checkout "$base_ref_resolved" --quiet || true
+    exit 1
+  fi
 
-  local safe_head_ref=$(safe_dirname "$INPUT_HEAD_REF")
-  local safe_base_ref=$(safe_dirname "$INPUT_BASE_REF")
+  # Build merged output
+  local merged_output_dir="$TMP_DIR/merged"
+  build_ref "$merge_branch" "$merged_output_dir"
 
+  # Compare outputs
   set +e
-  diff=$(git diff --no-index "$TMP_DIR/$safe_base_ref" "$TMP_DIR/$safe_head_ref")
+  diff=$(git diff --no-index "$base_output_dir" "$merged_output_dir" 2>&1)
+  local diff_exit_code=$?
 
+  debug_log "Git diff exit code: $diff_exit_code"
   debug_log "Git diff output:"
   debug_log "$diff"
   debug_log "End of git diff output"
   debug_log "------------------------------------"
 
-  if [[ -z "$diff" ]]; then
-    output="No differences found between $INPUT_BASE_REF and $INPUT_HEAD_REF"
+  # Clean up temporary branches
+  git checkout "$current_branch" --quiet || git checkout "$base_ref_resolved" --quiet || true
+  git branch -D "$merge_branch" --quiet || true
+
+  if [[ $diff_exit_code -eq 0 ]]; then
+    output="No differences found in kustomize output after merging $INPUT_HEAD_REF into $INPUT_BASE_REF"
   else
     # Just pass through the raw git diff output
     output="$diff"
   fi
 
-  escaped_output=${output//$'\n'/'%0A'}
+  local escaped_output=${output//$'\n'/'%0A'}
 
   if [ ${#escaped_output} -gt 65000 ]; then
     escaped_output="Output is greater than 65000 characters, and therefore too large to print as a github comment."