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Modernize codebase with type hints, linting, and Python 3.9+ support #1

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Run time

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Job	Run time
test (3.13)	18s
test (3.12)	16s
test (3.10)	20s
test (3.9)	22s
test (3.11)	15s
test (3.8)	17s
	1m 48s