Create SVG instruction notebook: code - #1056
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Here I am adding the initial notebook for spatially variable genes as part of #1046
It is a bit rougher than I might have liked, but because I will be out for a few days, I wanted to get what I have up for initial comments as at least a draft.
As discussed, I am doing Moran's I & nnsvg analysis, with a little bit of intro to
VoyagerandSpatialFeatureExperimentstructure to start out. I also have some comparisons between the two methods, and looking at SVGs vs. biological variation, which I want to talk a bit more about (how might technical variation be spatial?)I have not yet decided which chunks will be live and not, so if you have particular ones that you think absolutely should or should not be, please feel free to comment on that!
Here is a rendered version for easier viewing.
04-spatially_variable_genes.nb.html