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Achievement: Pair ExtraordinaireAchievement: Pull Sharkx2Achievement: YOLOAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair ExtraordinaireAchievement: Pull Sharkx2Achievement: YOLOAchievement: Arctic Code Vault Contributor

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AminMahpour/README.md

Hi, I'm Amin Mahpour

I'm a computational biologist and biochemist based in Boston, MA. I build practical tools for biological data analysis, scientific visualization, and AI-assisted research workflows.

My work sits at the intersection of biology, software engineering, and data-intensive analysis. I am especially interested in tools that make complex biological datasets easier to explore, visualize, and reason about.

Current Focus

  • Computational biology and genomics tooling
  • Scientific Python workflows for biological data analysis
  • Data visualization for genomic tracks and biological signals
  • Local-first AI agents for research and development workflows
  • Reproducible, practical software for scientists

Featured Projects

  • ChainAgents - A local-first LangChain Deep Agent behind a Chainlit UI, built around agentic AI workflows, MCP, and reusable skills.
  • Wigman - Python tools for generating heatmap plots from genomic BigWig data.
  • IsoKall - Iso-Seq and Kallisto integration for RNA-seq workflows.
  • PyMAP - A Python package for methylation analysis of probes.
  • pyCircs - Tools for circRNA analysis.

Tools And Technologies

Python, bioinformatics workflows, genomics, RNA-seq, data visualization, LangChain, Chainlit, MCP, scientific computing, and research software development.

Connect

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  1. ChainAgents ChainAgents Public

    This project runs a local-first LangChain DeepAgent behind a Chainlit UI and dedicated CLI.

    Python 1

  2. Wigman Wigman Public

    Generate heatmap plots from genomic BigWig data

    Python 2

  3. pyCircs pyCircs Public

    Tools for circRNA analysis

    Python

  4. PyMAP PyMAP Public

    Python package for Methylation Analysis of Probes

    Python 3 1