Issues

• An issue about beastlabs.evolution.likelihood.AncestralStateLogger

  BEAST2-Dev/BEASTLabs#26 · Filter by author biozj-tz opened on Sep 13, 2025
  2

• WeightedDirichlet Jacobian term

  enhancement
  BEAST2-Dev/BEASTLabs#25 · Filter by author walterxie opened on Jun 25, 2025

• Starting tree subtemplates merge with generic mergepoint

  BEAST2-Dev/BEASTLabs#21 · Filter by author bjoelle opened on Sep 5, 2023

• ConstantSitesAlignment

  enhancement
  BEAST2-Dev/BEASTLabs#20 · Filter by author walterxie opened on Dec 18, 2022

• Deadlock when using Particle Filter

  BEAST2-Dev/BEASTLabs#18 · Filter by author dreyes17 opened on Mar 31, 2022

• DocumentationTest fails for some classes

  BEAST2-Dev/BEASTLabs#17 · Filter by author kche309 opened on Feb 28, 2022

• SimpleRandomTree builds mixed clades under monophyly constraints

  BEAST2-Dev/BEASTLabs#8 · Filter by author Anaphory opened on May 7, 2019
  1

• Ancestral state reconstruction for multiple MRCAs with datatype-awareness

  BEAST2-Dev/BEASTLabs#5 · Filter by author Anaphory opened on Nov 15, 2017
  2

• Name clash

  BEAST2-Dev/BEASTLabs#4 · Filter by author gavryushkina opened on Sep 7, 2016
  4

• PrunedAlignment checks whether taxonSet is null, but it never is.

  BEAST2-Dev/BEASTLabs#3 · Filter by author Anaphory opened on Feb 1, 2016
  1

• MCMCMC mechanism for creating multiple chains duplicates the entire model

  BEAST2-Dev/BEASTLabs#2 · Filter by author tgvaughan opened on May 27, 2015

• ThreadedTreeLikelihood on resume can differs between -java and -beagle_GPU

  BEAST2-Dev/BEASTLabs#1 · Filter by author rbouckaert opened on Apr 14, 2015