research: test root agent instructions in directory classification - #16
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Implements #15 as a single-variable follow-up to #14. Phase 1 optionally injects the repository-root CLAUDE.md, otherwise AGENTS.md, verbatim. Directory payloads, thresholds, frozen revisions, direct-file Phase 2, and file scoring are unchanged. The new Issue 15 workflow records context source/size and per-phase model cost.