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1. Cirro-SDK-Python Cirro-SDK-Python Public

   Python SDK to interact with Cirro

   Python 3 3

2. nf-humann nf-humann Public

   Nextflow workflow running the HUMAnN metagenomic analysis tool

   Nextflow 2

3. nf-arcashla nf-arcashla Public

   Nextflow workflow to perform HLA typing from RNAseq data (arcasHLA)

   Nextflow 1

4. Cirro-local-agent Cirro-local-agent Public

   Agent to run workloads on local HPC environment

   Java 1

5. Cirro-pipelines Cirro-pipelines Public

   Pipeline configurations for cirro

   Python 5

6. Cirro-install-resources Cirro-install-resources Public

   Repository for CloudFormation templates used to install Cirro

   HCL