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Pull requests: Clinical-Genomics/cg

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Pull requests list

Set lims_status for external samples to done
#5044 opened Apr 21, 2026 by RasmusBurge-CG Contributor Loading…
15 tasks
1
Remove Scout from MIP RNA delivery types
#5042 opened Apr 20, 2026 by diitaz93 Contributor Loading…
3 of 7 tasks
1
3
Validate tomte sample sources
#5040 opened Apr 20, 2026 by islean Member Loading…
15 tasks
1
5
Keep a changelog
#5038 opened Apr 18, 2026 by dnil Member Loading…
15 tasks
1
1
Case created at non nullable
#5037 opened Apr 17, 2026 by mogmi Contributor • Draft
1 of 3 tasks
1
Two CG CI workflows exist. Pick the current pytest used with deploys to the default branch
#5036 opened Apr 17, 2026 by dnil Member Loading…
15 tasks
2
Add label to customers
#5035 opened Apr 16, 2026 by mogmi Contributor • Draft
15 tasks
1
1
Add endpoint to retrieve unhandled samples
#5034 opened Apr 16, 2026 by diitaz93 Contributor • Draft
15 tasks
1
Increase the fallback for microSALT version command
#4974 opened Mar 24, 2026 by RasmusBurge-CG Contributor Loading…
15 tasks
5
Send seq technique to Scout
#4968 opened Mar 20, 2026 by RasmusBurge-CG Contributor Loading…
15 tasks
1
1
Update Nallo to 0.11.0
#4948 opened Mar 11, 2026 by fellen31 Contributor • Draft
1 of 15 tasks
1
DEV - Switch reference genome to hg38 for raredisease
#4871 opened Feb 4, 2026 by diitaz93 Contributor • Draft
1 of 19 tasks
22
Patch post processing error raising
#4849 opened Jan 22, 2026 by islean Member Loading…
15 tasks
4
Add hasta2 login deploy workflow
#4825 opened Jan 14, 2026 by ahdamin Contributor Loading…
@ahdamin
2
Switch from abstract classes to protocols with generic types
#4797 opened Dec 22, 2025 by mogmi Contributor • Draft
15 tasks
2
Create analysis in Trailblazer first for raw-data
#4793 opened Dec 19, 2025 by mogmi Contributor • Draft
15 tasks
1
remove workflow_bin_path for taxprofiler
#4787 opened Dec 17, 2025 by RasmusBurge-CG Contributor Loading…
1 of 15 tasks
1
Remove workflow_bin_path
#4786 opened Dec 16, 2025 by RasmusBurge-CG Contributor Loading…
15 tasks
3
update variant catalog path in raredisease bundle
#4781 opened Dec 16, 2025 by ramprasadn Contributor Loading…
15 tasks
1
Add parent model for nextflow configs
#4773 opened Dec 12, 2025 by kedhammar Contributor • Draft
15 tasks
@diitaz93 @kedhammar
2
Test call to config case fails
#4710 opened Nov 13, 2025 by mogmi Contributor Loading…
15 tasks
1
Add analysis cascading
#4680 opened Oct 30, 2025 by islean Member • Draft
15 tasks
4
Make RNAFUSION samples be always tumour
#4537 opened Aug 1, 2025 by diitaz93 Contributor • Draft
2 of 12 tasks
2
23
Filter cancelled Samples for Tomte dna upload
#4498 opened Jul 8, 2025 by ahdamin Contributor Loading…
15 tasks
1
chore: create LICENSE file
#4472 opened Jun 26, 2025 by pbiology Contributor Loading…
1 of 3 tasks
1
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