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PR 7: adopt CosmoSIS native SACC likelihood (sacc_like), validated against the converter path - #417

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cailmdaley wants to merge 59 commits into

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feat/sacc-7-sacc-like

Open

PR 7: adopt CosmoSIS native SACC likelihood (sacc_like), validated against the converter path#417
cailmdaley wants to merge 59 commits into
developfrom
feat/sacc-7-sacc-like

Commits on Jul 9, 2026
- deps: py3.12 floor + SACC/blinding stack (sacc, firecrown, smokescreen)
  
  cailmdaley
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  d31a6f6
Commits on Jul 10, 2026
- deps: firecrown pip-import fixes (numpy<2.5 cap, NumCosmo patch script)
  
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  1d4826c
- feat(sacc_io): SACC read/write for the standard data-product layout
  
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  6050be0
- fix(sacc_io): enforce ascending grids; readers in insertion order
  
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  66bbbc0
- feat(cosmo_val): SACC writers for the born-as-SACC data products
  
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  2f4a8a8
- feat(twopoint): SACC → 2pt-FITS converter, byte-compatible with cosmosis_fitting
  
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  18ec7ff
- feat(one_covariance): SACC <-> OneCovariance file-format glue
  
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  f9b1d12
- fix(cosmo_val): tau covariance block derived from CovTauTh write-side
  
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  c631418
- feat(cosmo_val): define pseudo_cl_to_sacc_part, complete pseudo-Cl SACC part
  
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  483961f
- feat(cosmo_val): SACC part writers on cosebis / pure_eb / psf_systematics mixins
  
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  95e150f
- feat(workflow): born-as-SACC scripts (coarse/fine xi, pseudo-Cl, assemble)
  
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  ae03ea6
- fix(twopoint): fail fast on tomographic/ξ-less SACC; pin covariance gather
  
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  700a885
- test(pseudo_cl): fixture carries shear.redshift_path like the real cat_config
  
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  91f5d43
- WIP(workflow): born-as-SACC rule wiring - UNVERIFIED, interrupted mid-flight
  
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  dd474b3
- test(pseudo_cl): read the born-as-SACC part in the end-to-end catalog test
  
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  02d9cf3
- fix(workflow): wire the assemble_sacc rule and the per-statistic SACC parts
  
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  0f4a6f2
- test(assemble_sacc): integration test for the assemble_sacc.py script seam
  
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  99db96e
- fix(workflow): resolve xi_highres script path from the running checkout
  
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  9afaeaa
- fix(workflow): assemble the analysis file from the tagged pseudo-Cl + real cov
  
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  00460d8
- test(workflow): dry-run guard uses sys.executable, drops SNAKEMAKE_PROFILE
  
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  2d1747b
- docs(inference): mark inference_prep inputs pre-SACC, migration deferred to PR 7
  
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  a592bb8
- fix(pseudo_cl): born-at-declared-name kills the cross-rule pseudo-Cl collision
  
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  60b74c6
- fix(workflow): assemble fails loudly by default on the placeholder ξ covariance
  
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  e0519c8
- test(workflow): dry-run guard covers the cosmo_val assemble DAG
  
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  6a5df5b
- fix(bmodes): drop removed save_fits kwarg from run_xi_sweep's run_2pcf call
  
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  3561b36
- fix(assemble_sacc): validate expected parts, no silent statistic drop
  
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  149a50c
- Merge branch 'feat/sacc-3-2pt-converter' into feat/sacc-7-sacc-like
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  c37bdcb
- feat(sacc_like): sp_validation shim over CosmoSIS SaccClLikelihood
  
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- feat(inference): sacc_like ini template + config generator
  
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  1b05bf7
- feat(inference): rewire inference_prep to consume the assembled SACC
  
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  5d12350
- fix(sacc_like): keep self.sacc_data in arcmin so save_theory writes arcmin tags
  
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  db28602
- fix(inference): bind ini templates as inference_prep inputs, not params
  
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  becfeb2
- fix(sacc_like): defer cosmosis import so bare module import needs no cosmosis
  
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  151d997
Commits on Jul 16, 2026
- feat: SACC → 2pt-FITS converter + OneCovariance file-format glue
  
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  64b2b5f
Commits on Jul 18, 2026
- Merge remote-tracking branch 'origin/feat/sacc-2-sacc-io' into feat/sacc-3-2pt-converter
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  1ccd04f
- twopoint_convert: filter covariance selections by grid tag; guard empty selections
  
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  b007ed1
Commits on Jul 19, 2026
- refactor: merge twopoint_convert + one_covariance_io into sacc_interop
  
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  3e4fd7d
Commits on Jul 20, 2026
- refactor: fold sacc_interop into sacc_io — one SACC module
  
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- Merge remote-tracking branch 'origin/feat/sacc-3-2pt-converter' into feat/sacc-7-sacc-like
  
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  df6a590
- fix(Dockerfile): copy source before the blinding-extra editable install
  
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  06b24c6
- fix: reconcile pr7-lineage SACC callers with guarded sacc_io API
  
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  67db676
Commits on Jul 21, 2026
- Merge branch 'feat/sacc-4-cosmo-val-sacc' into feat/sacc-7-sacc-like
  
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  0443bc7
Commits on Aug 30, 2026
Commits on Aug 31, 2026
Commits on Oct 20, 2026
- Merge develop into feat/sacc-7-sacc-like
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  f5a572d
Commits on Oct 29, 2026
- Inference prep checks the catalogue's declared blind
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  01ce26a

Commits

Commits on Jul 9, 2026

Commits on Jul 10, 2026

Commits on Jul 16, 2026

Commits on Jul 18, 2026

Commits on Jul 19, 2026

Commits on Jul 20, 2026

Commits on Jul 21, 2026

Commits on Aug 30, 2026

Commits on Aug 31, 2026

Commits on Oct 20, 2026

Commits on Oct 29, 2026