Issues

• Every 'latest run' default can read another clone's run

  DataBiosphere/meta-disco#688 · Filter by author NoopDog opened on Oct 14, 2026

• make classify-and-report reports on the newest run, not the one classify made

  DataBiosphere/meta-disco#687 · Filter by author NoopDog opened on Oct 14, 2026
  1

• Link each bcftools stats report to the VCF it reports on, read from its own ID line

  DataBiosphere/meta-disco#683 · Filter by author NoopDog opened on Oct 13, 2026

• HPRC_R2: link each assembly's annotations and reference alignments to the assembly they were made from

  DataBiosphere/meta-disco#682 · Filter by author NoopDog opened on Oct 13, 2026

• Header rules for long-read and DRAGEN alignments: Winnowmap's preset, DRAGEN's DNA mode

  DataBiosphere/meta-disco#681 · Filter by author NoopDog opened on Oct 13, 2026

• AnVIL_MAGE lineage: each sequencing_library row's BAM is aligned from its two FASTQs

  DataBiosphere/meta-disco#680 · Filter by author NoopDog opened on Oct 13, 2026

• Value-map rows that map a non-variant data_type should declare variant_kind and variant_origin not_applicable

  DataBiosphere/meta-disco#679 · Filter by author NoopDog opened on Oct 13, 2026

• Epic: Increasing coverage

  DataBiosphere/meta-disco#677 · Filter by author NoopDog opened on Oct 13, 2026

• Show sample-ID coverage per dataset and outcome in the published dashboards

  DataBiosphere/meta-disco#676 · Filter by author NoopDog opened on Oct 13, 2026

• A stable sample key: one id per sample across runs, datasets and namespaces

  DataBiosphere/meta-disco#674 · Filter by author NoopDog opened on Oct 13, 2026

• Make the VCF pass of make classify fast again: per-file sample reading added about 3 minutes (#357)

  DataBiosphere/meta-disco#673 · Filter by author NoopDog opened on Oct 12, 2026

• Parse a BAM header once, shared by the classifier and the sample reader

  DataBiosphere/meta-disco#671 · Filter by author NoopDog opened on Oct 12, 2026

• Record each AnVIL donor's and biosample's identifiers by namespace

  DataBiosphere/meta-disco#669 · Filter by author NoopDog opened on Oct 11, 2026
  

• Measurement prototype: Hail VDS over the 1000G gVCFs (chr22) — incremental joint calling, subset extraction, export to the carrier index

  DataBiosphere/meta-disco#667 · Filter by author NoopDog opened on Oct 11, 2026
  

• A merge of structural-variant callers has no variant_kind

  DataBiosphere/meta-disco#666 · Filter by author NoopDog opened on Oct 11, 2026

• producing_step is quadratic in a header's step inputs

  DataBiosphere/meta-disco#662 · Filter by author NoopDog opened on Oct 10, 2026

• One parser for VCF ## lines: fold command-line extraction into parse_vcf_header_line

  DataBiosphere/meta-disco#660 · Filter by author NoopDog opened on Oct 10, 2026
  

• Curator knowledge base for known variant resources (dbSNP, ClinVar, known-indels), keyed on md5

  DataBiosphere/meta-disco#659 · Filter by author NoopDog opened on Oct 10, 2026
  

• Union rule for a multivalued dimension: several kinds at the winning tier (variant_kind)

  DataBiosphere/meta-disco#656 · Filter by author NoopDog opened on Oct 10, 2026
  1

  

• Sample count as a facet: read from the VCF #CHROM line (sites-only / single / multi-sample)

  DataBiosphere/meta-disco#655 · Filter by author NoopDog opened on Oct 9, 2026
  

• CLAUDE.md: check a claim when the check is cheap, else label how it is known

  DataBiosphere/meta-disco#653 · Filter by author NoopDog opened on Oct 9, 2026
  

• Scan whole VCFs whose variant kind the caller cannot give

  DataBiosphere/meta-disco#652 · Filter by author NoopDog opened on Oct 9, 2026
  

• Link nhp_dGTEx's STAR side outputs (gene counts, splice junctions) to their BAM

  DataBiosphere/meta-disco#642 · Filter by author NoopDog opened on Oct 8, 2026

• Rule out non-human assemblies in BED coordinate elimination

  DataBiosphere/meta-disco#640 · Filter by author NoopDog opened on Oct 7, 2026
  3

• Developing against managed-access datasets: code runs in Terra, only dataset-level aggregates leave

  DataBiosphere/meta-disco#637 · Filter by author NoopDog opened on Oct 7, 2026