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Release 6.0.0: publish flpq-data to PyPI - #155

Merged

gsvgit merged 278 commits into

Oct 14, 2026

Merged

Release 6.0.0: publish flpq-data to PyPI#155
gsvgit merged 278 commits into
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Commits on Sep 17, 2026
Commits on Sep 18, 2026
Commits on Sep 21, 2026
- docs(43-S5): bound the Wikipedia rate-limit re-queueing in the docs link check
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- docs(43-S5): stop resetting the Wikipedia rate-limit budget on success
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- docs(43-S6): mark task 43 done in the task log
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- docs(44-S1): record task 44, plan the coverage task, and add the lark dependency
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- feat(44-S2): add the MCFG data model, lark grammar, and mcfg_from_text
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- feat(44-S3): add MCFG semantic validation, start symbol, dimension and rank
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- feat(44-S4): add the MCFG writers and round-trip guarantees
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- docs(44-S5): add the MCFG module to the reference docs
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- test(44-S3): cover the body-atom side of the arity consistency check
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- docs(44-S6): mark task 44 done in the task log
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- chore: ignore the test.mcfg doctest artifact
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- feat(45-S1): enforce line and branch coverage >= 95% locally
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- ci(45-S2): enforce the coverage gate in CI
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- docs(45-S3): use the gh CLI in release recovery, drop the curl workaround
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- docs(45-S4): no-workaround rule in the tooling principle
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- docs(51-S1): record tasks 51-53 and write the detailed plan
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- docs(51-S2): record the CI-as-source-of-truth decision
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- docs(51-S3): reference the CI workflow steps instead of restating commands
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- docs(51-S4): point the skills at the CI workflow steps
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- ci(51-S5): replace duplicated policy comments with docs pointers
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- docs(51-S6): mark task 51 done in the task log
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- docs(52-S1): record the archive-structure guidance and write the plan
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- docs(52-S2): design the self-contained archive layout in the docs
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- docs(52-S3): update the graph PR and issue templates to the new layout
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- feat(52-S4): add the archive structure validator
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- feat(52-S5): gate uploads on the archive structure and add bucket audit
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- docs(52-S6): rework the FLPQ design for self-contained archives
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Commits on Sep 22, 2026
- style(52-S4): wrap long lines in the archive validator
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- docs(52): mark task 52 done
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- docs(46-S1): record the RPQ design-only scope and write the plan
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- docs(46-S2): record the RPQ design decision in the FLPQ design doc
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- docs(46-S3): add the RPQ stub template entries to the Grammars section
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- docs(47-S1): record task 47 and write the detailed plan
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- feat(47-S2): add the query_class column to reachable pairs
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- feat(47-S3): make the reachable-pairs generator query-class aware
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- docs(47-S4): document the query_class column on the site
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- fix(47-S3): make the reachable-pairs doctests parse and pass
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- style(47-S3): wrap the long toctree doctest line
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- docs(54-55): record the archive-extension and data-providing tasks
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- docs(54-S1): record user decisions and write the detailed plan
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- feat(54-S2): add the transition-system style to the .rsm format
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- feat(54-S3): validate query directories with per-query results.mtx
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- docs(54-S4): document the RSM format and the extended archive structure
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- refactor(54-S3): extract _graph_dimensions to deduplicate the validator
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- docs(55-S1): record user decisions and write the detailed plan
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- feat(55-S2): add --partial mode to the archive structure validator
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- feat(55-S3): add the partial-archive merge tool
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- docs(55-S4): make the Google Drive link the main data-providing way
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- refactor(55-S3): hoist the README section parse out of the comprehension
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- docs(56-S1): record task 56 and write the detailed plan
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- docs(56-S2): document the two optimized grammars on the category pages
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- docs(56-S3): record the equivalence-check results and document both label conventions
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- docs(56-S4): record the 41 re-uploaded archives with the optimized grammars
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- docs(56-S5): changelog entry and re-synced archive sizes
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- docs(56): mark task 56 done in the task log and plan
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Commits on Sep 23, 2026
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Commits on Sep 26, 2026
- docs(131): record the consistency-fix batch in the global plan
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- docs(131-S1): make the FSA canonical grammar match the distributed vf query
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- docs(131): mark S1 done in the detailed plan
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- docs(131-S2): move the link check out of the local quality gate
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- docs(133): write the detailed plan and mark #131 done in the global plan
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- docs(133-S1): re-point all download links to the 6.0.0 dataset prefix
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- docs(133-S2): refresh the Size (MB) columns against the 6.0.0 archives
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- docs(133-S3): update stale prefix references in utils docs and AGENTS.md
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- docs(132): write the detailed plan for the changelog completion
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- docs(132-S1): record the new capabilities in the changelog
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- docs(132-S2): record the 6.0.0 dataset move and removed download APIs
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- docs(134): write the detailed plan for the scratch cleanup
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- chore(134-S1): ignore test.csv alongside the other doctest scratch files
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- docs(134): mark all subtasks done in the detailed plan
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- docs: mark the consistency-fix issues done in the global plan
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- docs: correct the task 48 entry in the global plan
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- docs(135): write the detailed plan and point task 49 at issue #135
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- refactor(135-S1): restructure grammars/ into queries/{cfpq,rpq,mcfpq}/
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- docs(135): mark S1 done in the detailed plan
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- refactor(135-S2): rename the package cfpq_data to flpq_data
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- refactor(135-S3): rename download/DATASET with deprecated aliases
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- docs(135): mark S3 done in the detailed plan
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- refactor(135-S4): bump VERSION to 6.0.0 and record the rename in the changelog
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- docs(135): mark S4 done in the detailed plan
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- docs(135-S5): update README, AGENTS.md, skills, and license for flpq_data
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- docs(135): mark S5 done in the detailed plan
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- docs(135): correct the S2 commit hash in the plan
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- docs(plan): mark task 49 done in the global plan
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- docs(137): write the detailed plan and point task 50 at issue #137
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Commits on Oct 3, 2026
- docs(139): rewrite the detailed plan with decided design
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- feat(139-S1): serve reachable_pairs CSV from a versioned S3 path
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- docs(139): mark S1 done in the detailed plan
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- test(139-S2): cover the versioned reachable_pairs storage
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- docs(139): mark S2 done in the detailed plan
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- docs(139-S3): document the versioned reachable_pairs CSV
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- docs(139): mark S3 done in the detailed plan
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- chore(139-S4): publish and verify the versioned reachable_pairs CSV
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- docs(146): write the detailed plan and add task 146 to the global plan
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- fix(146-S1): reject indexed stored reverses in the archive checker
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- docs(146): mark S1 done in the detailed plan
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- feat(146-S2): add the strip-stored-reverses archive tool
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- docs(146): mark S2 done in the detailed plan
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- chore(146-S3): strip stored reverses from 7 java_points_to archives and re-upload to S3
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- docs(146): mark S3 done in the detailed plan
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- docs(146-S4): drop stored reverse rows from the 7 java-points-to per-graph and category pages
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- docs(146): mark S4 done in the detailed plan
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- docs(146-S5): refresh the java-points-to size column and record the fix
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- docs(146): mark S5 done in the detailed plan
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- docs(137-S1): move dataset docs to per-class query sections
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- docs(137): mark S1 done in the detailed plan
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- feat(137-S2): generate per-class applicable-graphs lists from the CSV
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- docs(137): mark S2 done in the detailed plan
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- feat(137-S3): require a CSV registry row for every merged query
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- docs(137): mark S3 done in the detailed plan
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- docs(137-S4): remove the benchmarks category and document the site hierarchy
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- docs(137): mark S4 done in the detailed plan
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Commits on Oct 5, 2026
- docs(149): write the detailed plan and replace the global plan with the core rework plan
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- docs(149-S1): record the core rework design in docs/flpq.rst
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- docs(149): mark S1 done in the detailed plan
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- docs(149-S2): update the AGENTS.md package layout and the changelog
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- docs(149): mark S2 done in the detailed plan
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- docs(150): write the detailed plan for the graph registry task
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- feat(150-S1): add DATASET_VERSION and the registry generator
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- docs(150): mark S1 done in the detailed plan
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- feat(150-S2): generate and commit the bundled registry.json
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- docs(150): mark S2 done in the detailed plan
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- feat(150-S3): add the network-free metadata API
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- docs(150): mark S3 done in the detailed plan
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- feat(150-S4): drop GRAPHS/DATASET; validate names against the registry
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- docs(150): mark task 150 done in the global plan
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- docs(151): write the detailed plan for the machine-global cache
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- feat(151-S1): add platformdirs and the machine-global cache module
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- docs(151): mark S1 done in the detailed plan
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- feat(151-S2): lazy graph_dir accessor with sha256-verified cache installs
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- docs(151): mark S2 done in the detailed plan
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- feat(151-S3): resolve reachable_pairs.csv from the per-version cache
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- docs(151): mark S3 done in the detailed plan
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- feat(151-S4): drop DATA/GRAPHS_DIR; migrate references to the cache
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- docs(151): mark task 151 done in the global plan
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- docs(152): write the detailed plan for the cache manipulation API
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- feat(152-S1): add clear_cache to the cache manipulation API
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- docs(152): mark S1 done in the detailed plan
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- docs(152): mark task 152 done; record the stale coverage.json pitfall
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- docs: record the docstring cross-reference convention
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- ci: target Dependabot version updates at dev
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- docs(153-S1): record the format-conversion design in the graphs page
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- feat(153-S2): add streaming edge readers for the mtx, txt, and rdf formats
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- feat(153-S3): add streaming edge writers for the txt, mtx, rdf, and .g formats
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- feat(153-S4): drop CSV and reimplement graph I/O on the edge streams
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- docs(153): mark S4 done in the detailed plan
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- feat(153-S5): add the convert_graph dispatcher over the edge streams
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- docs(153): mark S5 done and record the #138 verification in the plan
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- docs(153-S6): complete the docs for streaming format conversion
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- fix(153-S6): make mtx_dir_from_edges all-or-nothing on failure
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- docs(153): record the code-review outcome in the detailed plan
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Commits on Oct 6, 2026
- fix(153): close the open temp handle before unlinking on failure
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- fix(153): document convert_graph under its full module path
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- docs(153): add the fresh docs build target and stale-artifact policy
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- fix: point all website and repo URLs at the renamed FLPQ_Data
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- docs(154): write the detailed plan for TestPyPI dev-version publishing
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- feat(154-S1): add a dev-version setter for TestPyPI pre-publish
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- ci(154-S2): give each TestPyPI PR run a unique dev version
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- docs(154-S3): document the TestPyPI dev-version pre-publish
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- docs(154): mark S1-S3 done in the detailed plan
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- Merge origin/master into dev to make the release PR mergeable
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- docs(156): write the detailed plan for the CFPQ_Data to FLPQ_Data rename
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- docs(156-S1): rename project to FLPQ_Data in packaging metadata and top-level files
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- docs(156-S2): rename project to FLPQ_Data in the documentation
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- docs(156-S3): rename the logo file to FLPQDataLogo.svg
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- ci(156-S4): rename project to FLPQ_Data in CI step names and contribution templates
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- docs(156-S5): rename project to FLPQ_Data in the skill descriptions
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- docs(156): mark S5 done in the detailed plan
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- docs(156): fix line wrapping in AGENTS.md after the rename
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- docs(156): record the code-review outcome in the detailed plan
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Commits on Oct 8, 2026
- docs(157-S4): record the uniprot sparse-grammar experiment
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Commits on Oct 13, 2026
- feat(130-S6): fill the 56 big-graph reachable-pair reference results
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- docs(130): mark S5 and S6 done in the detailed plan
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- docs: record the FSA canonical-grammar fix in the changelog
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- fix: keep the blank line after the promoted header in bump_version.py
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- chore: release 6.0.0
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- docs(161): write the detailed plan for removing the Version row from per-graph Info tables
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- docs(161-S1): remove the Version row from the 113 current per-graph pages
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- docs(161-S2): remove the Version row from the 54 historical old_graphs pages
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