Hallem Lab
- 6 followers
- Los Angeles, CA
- https://www.hallemlab.com
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Wild_Worm_Codon_Adapter
Wild_Worm_Codon_Adapter PublicShiny Web app for automatic codon optimization based on codon usage in Strongyloides species, Pristionchus species, Brugia malayi, as well as user-provided custom codon lookup tables
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Strongyloides_RNAseq_Browser
Strongyloides_RNAseq_Browser PublicShiny Web App for Browsing/Analysis of publicly available Strongyloides RNAseq datasets
R 1
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Bryant-DeMarco-Hallem-2021
Bryant-DeMarco-Hallem-2021 PublicPreprocessing and analysis files related to the Strongyloides RNAseq Browser
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Bryant-and-Hallem-2021
Bryant-and-Hallem-2021 PublicPreprocessing and analysis files related to the Wild Worm Codon Adapter
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Bryant_et_al_2021
Bryant_et_al_2021 PublicData and code associated with the Hallem Lab manuscript titled "The neural basis of heat seeking in a human-infective parasitic worm."
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Repositories
- Walsh_et_al_2026 Public
Repository for the manuscript, "Neuronally sensed oxygen drives behavior and development in human-infective, skin-penetrating nematodes"
- Wild_Worm_Codon_Adapter Public
Shiny Web app for automatic codon optimization based on codon usage in Strongyloides species, Pristionchus species, Brugia malayi, as well as user-provided custom codon lookup tables
- Patel_et_al_2025 Public
Repository for the manuscript, "Dopamine signaling drives skin invasion by human-infective nematodes," by Ruhi Patel, Gloria Bartolo, Michelle L. Castelletto, Aracely Garcia Romero, Astra S. Bryant, George W. Agak, and Elissa A. Hallem.
- Strongyloides_RNAseq_Browser Public
Shiny Web App for Browsing/Analysis of publicly available Strongyloides RNAseq datasets
- Banerjee-et-al-2025 Public
All data accompanying the manuscript, "Carbon dioxide shapes parasite-host interactions in a human-infective nematode."
- Bryant_et_al_2021 Public
Data and code associated with the Hallem Lab manuscript titled "The neural basis of heat seeking in a human-infective parasitic worm."
- Banerjee_et_al_2023 Public
All raw data that support the findings of the manuscript "Distinct neural circuits establish similar chemosensory behaviors across life stages in C. elegans".
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