Fix/28 full rerun targeted deletion - #32

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thompsonmj merged 12 commits into

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fix/28-full-rerun-targeted-deletion

May 11, 2026

Commits on Feb 20, 2026

Refactor output path computation into shared helper

thompsonmj
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claude
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9a12673
Fix #28: target --full-rerun to TaxonoPy-specific output files via manifest

thompsonmj
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claude
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55236b1
Add tests for manifest-based output tracking

thompsonmj
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claude
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504de67
Document --full-rerun behavior, manifest, and rerun lifecycle

thompsonmj
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claude
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eb7b5bb
Update contribution convention to use Co-Authored-By for AI attribution

thompsonmj
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claude
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efae52f

Commits on Feb 24, 2026

Prevent symlink and traversal sequences from escaping the output directory

thompsonmj
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claude
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b0b3c62
Add security tests for manifest deletion path containment

thompsonmj
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claude
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98b2e0a
Fix linting errors
thompsonmj
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d392ba1
Raise on corrupt or unreadable manifest with an actionable error message

thompsonmj
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claude
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661bfed
Test that read_manifest raises on corrupt JSON

thompsonmj
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claude
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73019c0
Document no-hard-wrap convention and fix existing wraps in AGENTS.md

thompsonmj
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claude
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75691a8
Remove hard wrapping from all files touched by this PR

thompsonmj
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claude
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273edcb