Updated pipeline to run on the latest versions of Nextflow#2

Merged

cgoina merged 25 commits into

mainfrom

Jul 2, 2026

Commits on Jan 27, 2026

update dask
cgoina
committed

Commits on Jun 24, 2026

a first pass of updating the code to be v2 parser compliant
cgoina
committed

Commits on Jun 25, 2026

replaced local multiscale subworkflow with the one from nextflow-modules
cgoina
committed

Commits on Jun 26, 2026

update cellpose tools:
cgoina
committed

Commits on Jun 27, 2026

update multiscale module
cgoina
committed

Commits on Jun 28, 2026

Commits on Jun 30, 2026

Commits on Jul 1, 2026

Commits on Jul 2, 2026