Implement channel-based Quarto notebook reporting process#77

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copilot/create-reporting-process-plan

Commits on Apr 7, 2026

Implement channel-based notebook reporting process

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dimalvovs
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Fix typos in template_sample.qmd and template_sharing.qmd

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dimalvovs
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Fix RENDER_NOTEBOOK tests: use process.out[0][0] to access emission value

Copilot
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dimalvovs
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Fix RENDER_NOTEBOOK tests: use getFileName().toString() instead of getName()

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dimalvovs
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Fix integration test: remove deleted sample_plot/compare_plot imports from pseudobulk_phenotype.nf

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dimalvovs
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Fix RENDER_NOTEBOOK: resolve samplesheet to absolute path for Quarto

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dimalvovs
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