GH action maintenance

.github/dependabot.yml

@@ -0,0 +1,10 @@
+# Set update schedule for GitHub Actions
+
+version: 2
+updates:
+
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      # Check for updates to GitHub Actions every week
+      interval: "weekly"

.github/workflows/deploy.yaml

@@ -22,7 +22,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v7
 
       - name: testpypi_deploy
         uses: MDAnalysis/pypi-deployment@main
@@ -45,7 +45,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v7
 
       - name: pypi_deploy
         uses: MDAnalysis/pypi-deployment@main

.github/workflows/docs.yaml

@@ -21,19 +21,19 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v7
       with:
         fetch-depth: 0         
 
     - name: setup_miniconda
-      uses: conda-incubator/setup-miniconda@v2
+      uses: conda-incubator/setup-miniconda@v4
       with:
         python-version: 3.11
         environment-file: docs/requirements.yaml
         auto-update-conda: true
         channel-priority: flexible
         channels: conda-forge
-        miniforge-variant: Mambaforge
+        miniforge-version: latest
         use-mamba: true
 
     - name: Build and install package
@@ -46,15 +46,15 @@ jobs:
         cd docs && sphinx-build -b html source build
 
     - name: deploy docs
-      uses: peaceiris/actions-gh-pages@v3
+      uses: peaceiris/actions-gh-pages@v4
       if: github.event_name != 'pull_request'
       with:
         github_token: ${{ secrets.GITHUB_TOKEN }}
         publish_dir: ./docs/build
         user_name: 'github-actions'
         user_email: 'github-action@users.noreply.github.com'
 
-    - uses: actions/upload-artifact@v3
+    - uses: actions/upload-artifact@v7
       if: github.event_name == 'pull_request'
       with:
         name: pr_docs

.github/workflows/gh-ci.yaml

@@ -30,17 +30,17 @@ jobs:
         fail-fast: false
         matrix:
           os: [macOS-latest, ubuntu-latest, windows-latest]
-          python-version: ["3.10", "3.11", "3.12"]
+          python-version: ["3.11", "3.12", "3.13", "3.14"]
           mdanalysis-version: ["latest", "develop"]
           # Manually exclude any combinations of the test matrix that can't be run 
-          exclude:
+          #exclude:
             # The latest release of MDAnalysis only supports up to Python 3.11
             # so we exclude 3.12 from the test matrix (issue #20)
-            - python-version: "3.12"
-              mdanalysis-version: "latest"
+            #- python-version: "3.12"
+            #  mdanalysis-version: "latest"
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v7
 
     - name: Build information
       run: |
@@ -50,15 +50,16 @@ jobs:
 
     # More info on options: https://github.com/conda-incubator/setup-miniconda
     - name: Install conda dependencies
-      uses: conda-incubator/setup-miniconda@v3
+      uses: conda-incubator/setup-miniconda@v4
       with:
         python-version: ${{ matrix.python-version }}
         environment-file: devtools/conda-envs/test_env.yaml
         add-pip-as-python-dependency: true
 
-        miniforge-variant: Mambaforge
+        miniforge-version: latest
         use-mamba: true
-        channels: conda-forge, defaults
+        channels: conda-forge
+        conda-remove-defaults: "true"
 
         activate-environment: pathsimanalysis-test
         auto-update-conda: true
@@ -70,7 +71,7 @@ jobs:
       with:
         version: ${{ matrix.mdanalysis-version }}
         install-tests: true
-        installer:  mamba 
+        installer:  conda 
         shell: bash  -l {0} 
 
     - name: Install package
@@ -93,7 +94,7 @@ jobs:
 
     - name: codecov
       if: github.repository == 'MDAnalysis/pathsimanalysis' && github.event_name != 'schedule'
-      uses: codecov/codecov-action@v4
+      uses: codecov/codecov-action@v7
       with:
         file: coverage.xml
         name: codecov-${{ matrix.os }}-py${{ matrix.python-version }}
@@ -106,10 +107,10 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v7
 
     - name: Set up Python
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v6
       with:
         python-version: "3.11"
 
@@ -131,10 +132,10 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v7
 
     - name: Set up Python
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v6
       with:
         python-version: "3.11"
 

.readthedocs.yaml

@@ -6,7 +6,7 @@ sphinx:
 build:
   os: ubuntu-lts-latest
   tools:
-    python: "mambaforge-4.10"
+    python: "miniforge3-latest"
 
 python:
   install:

devtools/conda-envs/test_env.yaml

@@ -1,7 +1,6 @@
 name: pathsimanalysis-test
 channels:
   - conda-forge
-  - defaults
 dependencies:
   # Base depends
   - python

pyproject.toml

@@ -22,10 +22,10 @@ classifiers = [
     "License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)",
     "Programming Language :: C",
     "Programming Language :: Python",
-    "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
     "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
     "Topic :: Scientific/Engineering",
     "Topic :: Software Development :: Libraries :: Python Modules",
 ]