mafft version change#43
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Mayne941 merged 5 commits intoMultipathogenGenomics:stagingfrom Apr 15, 2026
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Also added a commit that fixes an error I was getting when target fasta headers were longer than 100 characters. Caused by some parts of the code storing the first 100 chars and other parts storing the full string. Checks for the presence of one using the other then caused issues. This was sometimes caused by the addition of the hash on the end of the header for the automated mapping table generation. |
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Many thanks for your support. Merging into staging, queued for release with v9.3 shortly |
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change mafft version to 7.5.0.5 to avoid segfault bug. Bug occurs in flatten_consensus in consensus.py in the mafft command that incudes --addfragments. Seems to be triggered by consensus sequences with high N count
also updated kraken and viralconsensus