All pull requests

Pull requests

• chore(deps): bump paramiko from 4.0.0 to 5.0.0 in /recipes/codonfm_ptl_te

  dependenciespython
  #1797·dependabot[bot] opened Nov 7, 2026Bot·

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• chore(deps): bump nbconvert from 7.16.6 to 7.17.2 in /recipes/codonfm_ptl_te

  dependenciespython
  #1796·dependabot[bot] opened Nov 6, 2026Bot·

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• chore(deps): bump torch from 2.6.0a0+ecf3bae40a.nv25.01 to 2.13.0 in /models/amplify

  dependenciespython
  #1794·dependabot[bot] opened Nov 5, 2026Bot·

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• Fix convert_qwen3_te_to_hf ignoring lm_head.weight for untied configs

  #1793·SID-6921 opened Nov 3, 2026·

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• Bump NGC PyTorch base image to 26.10-py3

  #1792·svc-bionemo opened Nov 1, 2026Collaborator·3 tasks done·

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• Use a stable pathname seed for record augmentation

  #1791·dean-jordan opened Nov 1, 2026·

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• Fix overwrite protection for all preprocessing outputs

  #1790·dean-jordan opened Nov 1, 2026·

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• Fix CodonFM prediction merging across unequal rank batch boundaries

  #1789·canblmz1 opened Oct 30, 2026·3 of 8 tasks·

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• chore(deps): bump virtualenv from 21.7.9 to 21.14.9 in /recipes/nemotron-stitch

  dependenciespython:uv
  #1788·dependabot[bot] opened Oct 23, 2026Bot·

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• chore(deps): bump virtualenv from 20.34.0 to 21.14.9 in /recipes/codonfm_ptl_te

  dependenciespython
  #1787·dependabot[bot] opened Oct 23, 2026Bot·

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• chore(deps): bump pillow from 12.3.0 to 13.0.0 in /recipes/codonfm_ptl_te

  dependenciespython
  #1786·dependabot[bot] opened Oct 23, 2026Bot·

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• fix(recipes): reject duplicate FASTA sequence ids in NvFaidx

  #1781·v0ropaev opened Oct 10, 2026·4 of 5 tasks·

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• chore(deps): bump hydra-core from 1.3.2 to 1.3.8 in /interpretability/sparse_autoencoders

  dependenciespython:uv
  #1780·dependabot[bot] opened Oct 9, 2026Bot·

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• chore(deps): bump hydra-optuna-sweeper from 1.2.0 to 1.3.0 in /recipes/codonfm_ptl_te

  dependenciespython
  #1779·dependabot[bot] opened Oct 9, 2026Bot·

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• deps: bump hydra-core to 1.3.7 and hydra-optuna-sweeper to 1.3.0 in codonfm_ptl_te (GHSA-mwj6-rfh8-7qf4, GHSA-5jjj-9xc3-rm56)

  #1777·katsugtgz opened Oct 9, 2026·

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• chore(deps): bump jupyterlab from 4.4.5 to 4.5.11 in /recipes/codonfm_ptl_te

  dependenciespython
  #1776·dependabot[bot] opened Oct 6, 2026Bot·

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• chore(deps): bump werkzeug from 3.1.3 to 3.1.9 in /recipes/codonfm_ptl_te

  dependenciespython
  #1774·dependabot[bot] opened Oct 6, 2026Bot·

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• chore(deps): bump fsspec from 2025.7.0 to 2026.6.0 in /recipes/codonfm_ptl_te

  dependenciespython
  #1773·dependabot[bot] opened Oct 6, 2026Bot·

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• chore(deps): bump datasets from 4.1.1 to 5.0.1 in /recipes/codonfm_ptl_te

  dependenciespython
  #1772·dependabot[bot] opened Oct 6, 2026Bot·

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• chore(deps): bump mako from 1.3.10 to 1.4.2 in /recipes/codonfm_ptl_te

  dependenciespython
  #1771·dependabot[bot] opened Oct 6, 2026Bot·

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• chore(deps): bump sentence-transformers from 5.2.0 to 5.6.0 in /interpretability/sparse_autoencoders

  dependenciespython:uv
  #1770·dependabot[bot] opened Oct 6, 2026Bot·

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• chore(deps): bump urllib3 from 1.26.20 to 2.8.0 in /recipes/codonfm_ptl_te

  dependenciespython
  #1768·dependabot[bot] opened Oct 5, 2026Bot·

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• chore(deps): bump urllib3 from 2.6.3 to 2.8.0 in /interpretability/sparse_autoencoders

  dependenciespython:uv
  #1767·dependabot[bot] opened Oct 5, 2026Bot·

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• collator: reject THD CP shards with non-divisible padded lengths

  #1765·andrewstellman opened Sep 29, 2026·2 of 9 tasks·

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• amplify: keep dtype/device of padding rows in _pad_weights

  #1764·andrewstellman opened Sep 29, 2026·2 of 9 tasks·

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