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pdbe-api-training
pdbe-api-training PublicInteractive Python notebooks for PDBe API training
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Repositories
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A Python-based pipeline to wrap around a transformer model to annotated IUCr-style JATS XML for functional protein residues
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Import metadata from mmCIF files into metadata-only files, or merge them into existing models
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PDBe MCP Servers integrate Protein Data Bank Europe resources with LLMs via Model Context Protocol. Provides seamless access to protein structure data through API tools and graph database schema assistance for intelligent Cypher query generation, bridging structural biology and AI research.
- ner_for_protein_structures Public
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Notebook-Driven Development to nurture new features supported and maintained by our diverse user base.
- AFDB-Integration-Kit Public
This repository provides a set of easy-to-use tools for generating the required files and metadata to seamlessly integrate your models into AFDB.
- mmcif-validator Public
Real-time VSCode extension and standalone Python script for validating mmCIF/CIF files against the PDBx/mmCIF dictionary or any CIF dictionary.
- pdbe-notebooks Public
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