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@PennLINC

Lifespan Informatics and Neuroimaging Center

The Lifespan Informatics and Neuroimaging Center at the University of Pennylvannia
README.md

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  1. qsiprep qsiprep Public

    Preprocessing of diffusion MRI

    Python 174 62

  2. qsirecon qsirecon Public

    Reconstruction of preprocessed q-space images (dMRI)

    Python 19 14

  3. aslprep aslprep Public

    Preprocessing of arterial spin labeling (ASL) data

    Python 54 18

  4. xcp_d xcp_d Public

    Post-processing of fMRIPrep, NiBabies, and HCP outputs

    Python 107 33

  5. CuBIDS CuBIDS Public

    Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

    Python 29 13

  6. babs babs Public

    BIDS App Bootstrap (BABS)

    Python 12 7

Repositories

Showing 10 of 209 repositories
  • sypres-docs Public
    PennLINC/sypres-docs’s past year of commit activity
    HTML 0 MIT 0 1 6 Updated Jan 25, 2026
  • ITK Public Forked from InsightSoftwareConsortium/ITK

    Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

    PennLINC/ITK’s past year of commit activity
    C++ 0 Apache-2.0 732 0 1 Updated Jan 25, 2026
  • CuBIDS Public

    Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

    PennLINC/CuBIDS’s past year of commit activity
    Python 29 MIT 13 47 9 Updated Jan 23, 2026
  • mrtrix3 Public Forked from MRtrix3/mrtrix3

    MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

    PennLINC/mrtrix3’s past year of commit activity
    C++ 0 MPL-2.0 193 0 0 Updated Jan 23, 2026
  • DSI-Studio Public Forked from frankyeh/DSI-Studio

    A Tractography Tool for Diffusion MRI

    PennLINC/DSI-Studio’s past year of commit activity
    C++ 1 64 0 0 Updated Jan 22, 2026
  • qsirecon Public

    Reconstruction of preprocessed q-space images (dMRI)

    PennLINC/qsirecon’s past year of commit activity
    Python 19 BSD-3-Clause 14 76 7 Updated Jan 22, 2026
  • luo_wm_dev Public
    PennLINC/luo_wm_dev’s past year of commit activity
    HTML 1 0 0 0 Updated Jan 22, 2026
  • qsiprep_build Public

    Builds the dependencies for qsiprep

    PennLINC/qsiprep_build’s past year of commit activity
    Python 4 Apache-2.0 5 1 1 Updated Jan 20, 2026
  • xcp_d Public

    Post-processing of fMRIPrep, NiBabies, and HCP outputs

    PennLINC/xcp_d’s past year of commit activity
    Python 107 BSD-3-Clause 33 49 14 Updated Jan 19, 2026
  • qsirecon_build Public

    Docker build for QSIRecon

    PennLINC/qsirecon_build’s past year of commit activity
    Dockerfile 0 Apache-2.0 0 0 0 Updated Jan 17, 2026
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